Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0407
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31860.2 68417.m04527 protein phosphatase 2C, putative / PP2C...    62   3e-10
At4g31860.1 68417.m04526 protein phosphatase 2C, putative / PP2C...    62   3e-10
At2g25070.1 68415.m02999 protein phosphatase 2C, putative / PP2C...    60   1e-09
At5g59220.1 68418.m07422 protein phosphatase 2C, putative / PP2C...    28   4.0  
At1g23900.2 68414.m03016 gamma-adaptin, putative similar to SP|O...    27   5.3  
At1g23900.1 68414.m03015 gamma-adaptin, putative similar to SP|O...    27   5.3  
At1g08480.1 68414.m00939 expressed protein                             27   5.3  
At2g29380.1 68415.m03569 protein phosphatase 2C, putative / PP2C...    27   7.0  
At1g07430.1 68414.m00793 protein phosphatase 2C, putative / PP2C...    27   7.0  

>At4g31860.2 68417.m04527 protein phosphatase 2C, putative / PP2C,
           putative protein phosphatase 2C, Schizosaccharomyces
           pombe, PIR2:S54297
          Length = 275

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 25/42 (59%), Positives = 33/42 (78%)
 Frame = +2

Query: 332 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHA 457
           MG +L+ P+T K++E GE + LRYG++SMQGWR  MEDAH A
Sbjct: 1   MGIYLSTPKTDKFSEDGENHKLRYGLSSMQGWRASMEDAHAA 42


>At4g31860.1 68417.m04526 protein phosphatase 2C, putative / PP2C,
           putative protein phosphatase 2C, Schizosaccharomyces
           pombe, PIR2:S54297
          Length = 357

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 25/42 (59%), Positives = 33/42 (78%)
 Frame = +2

Query: 332 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHA 457
           MG +L+ P+T K++E GE + LRYG++SMQGWR  MEDAH A
Sbjct: 1   MGIYLSTPKTDKFSEDGENHKLRYGLSSMQGWRASMEDAHAA 42


>At2g25070.1 68415.m02999 protein phosphatase 2C, putative / PP2C,
           putative
          Length = 355

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 24/42 (57%), Positives = 33/42 (78%)
 Frame = +2

Query: 332 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHA 457
           MG +L+ P+T+K +E GE + LR+G++SMQGWR  MEDAH A
Sbjct: 1   MGTYLSSPKTEKLSEDGENDKLRFGLSSMQGWRATMEDAHAA 42


>At5g59220.1 68418.m07422 protein phosphatase 2C, putative / PP2C,
           putative ABA induced protein phosphatase 2C, Fagus
           sylvatica, EMBL:FSY277743
          Length = 413

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 398 RYGVASMQGWRVEMEDAHHAHSL*TVH 478
           +YGVAS+ G R EMEDA   H   + H
Sbjct: 111 KYGVASVCGRRREMEDAVAVHPFFSRH 137


>At1g23900.2 68414.m03016 gamma-adaptin, putative similar to
           SP|O43747 Adapter-related protein complex 1 gamma 1
           subunit (Gamma-adaptin) (Clathrin assembly protein
           complex 1 gamma-1 large chain) {Homo sapiens}; contains
           Pfam profiles PF01602: Adaptin N terminal region,
           PF02883: Adaptin C-terminal domain
          Length = 876

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +1

Query: 148 LGLEEPLLAYKCNVKIV*RDCVRSYHSDASTRLLRYVRDVNLSA 279
           LG+E+P+   + +   V  D +  ++SD++T+ +  V  + LS+
Sbjct: 498 LGIEDPITVTESDAVDVIEDAITRHNSDSTTKAMALVALLKLSS 541


>At1g23900.1 68414.m03015 gamma-adaptin, putative similar to
           SP|O43747 Adapter-related protein complex 1 gamma 1
           subunit (Gamma-adaptin) (Clathrin assembly protein
           complex 1 gamma-1 large chain) {Homo sapiens}; contains
           Pfam profiles PF01602: Adaptin N terminal region,
           PF02883: Adaptin C-terminal domain
          Length = 876

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +1

Query: 148 LGLEEPLLAYKCNVKIV*RDCVRSYHSDASTRLLRYVRDVNLSA 279
           LG+E+P+   + +   V  D +  ++SD++T+ +  V  + LS+
Sbjct: 498 LGIEDPITVTESDAVDVIEDAITRHNSDSTTKAMALVALLKLSS 541


>At1g08480.1 68414.m00939 expressed protein
          Length = 142

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 311 YGELGLSMGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAHSL 466
           +G  G ++GA        KY+ S  G  L +    + GW    E A+H   L
Sbjct: 70  FGVTGAALGAVSTAAFAWKYSRSPHGAALSFLGGGVFGWTFGQEVANHTLQL 121


>At2g29380.1 68415.m03569 protein phosphatase 2C, putative / PP2C,
           putative contains  PF00481: Protein phosphatase 2C
           domain; similar to protein phpsphatase 2C (PP2C)
           (GI:7768151) [Fagus sylvatica].
          Length = 362

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 398 RYGVASMQGWRVEMEDAHHAH 460
           RYGV+S+ G R EMEDA   H
Sbjct: 77  RYGVSSVCGRRREMEDAVAIH 97


>At1g07430.1 68414.m00793 protein phosphatase 2C, putative / PP2C,
           putative similar to GB:CAB90633 from [Fagus sylvatica]
          Length = 442

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 398 RYGVASMQGWRVEMEDAHHAH 460
           RYGVAS+ G R +MEDA   H
Sbjct: 120 RYGVASVCGRRRDMEDAVALH 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,823,236
Number of Sequences: 28952
Number of extensions: 154755
Number of successful extensions: 345
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)