Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0406
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   4.9  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   4.9  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   4.9  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   4.9  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   4.9  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   4.9  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   4.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.4  

>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 662 RTESCRSRTKRNRHD 618
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 662 RTESCRSRTKRNRHD 618
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 662 RTESCRSRTKRNRHD 618
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 662 RTESCRSRTKRNRHD 618
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 662 RTESCRSRTKRNRHD 618
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 662 RTESCRSRTKRNRHD 618
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 662 RTESCRSRTKRNRHD 618
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = -1

Query: 276 ATSPRTSPPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFH 157
           ++S  T+ P  S  +  +R      CS  + P+   + FH
Sbjct: 324 SSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKLRFH 363


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 120 PDLSAASSGHFGLPRRTLVFK 58
           PDL+  S G  GLP   L  +
Sbjct: 336 PDLAGTSQGSAGLPSAILAMR 356


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 189 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 106
           SE   P+   HG R  RQ+ +   D  +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,450
Number of Sequences: 438
Number of extensions: 5250
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)