Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0397
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0456 + 29521282-29522064 32 0.52
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 31 0.90
08_01_0799 + 7734031-7735102,7735453-7735475 30 2.1
03_04_0006 + 16257288-16259522 30 2.1
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 29 2.8
06_03_0854 + 25400855-25403741,25406174-25407708 29 3.6
06_03_1448 + 30235336-30236763 29 4.8
06_03_1443 + 30182018-30183445 29 4.8
06_03_1440 + 30166515-30167942 29 4.8
06_03_1437 + 30151030-30152457 29 4.8
06_03_1429 + 30100834-30102261 29 4.8
06_03_1425 + 30084383-30085810 29 4.8
06_03_1420 - 30053713-30055140 29 4.8
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 4.8
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 4.8
01_01_1195 - 9567023-9567789,9567871-9568120 29 4.8
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 6.4
12_02_0077 - 13288916-13289659,13289689-13289691 28 8.4
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692 28 8.4
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 28 8.4
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 8.4
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.52
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = +1
Query: 94 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 216
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 489 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 343
G+ PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>08_01_0799 + 7734031-7735102,7735453-7735475
Length = 364
Score = 29.9 bits (64), Expect = 2.1
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 147 VSATSPLCTLGTKHRAPADI--IDRAPLPPNRVSNETMK*WFFSDDRAKRSPTYATPLMS 320
+S L T RA D+ + A P V +ET F SDD +K +P YAT M+
Sbjct: 70 ISVYLELLTKNCAVRAAYDLRLVKHATGLPMSVYSETTHRMFNSDDSSKFAPPYAT-FMN 128
Query: 321 PYNARLESS 347
N +E+S
Sbjct: 129 RSNLEMEAS 137
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 282 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 434
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 683 CTTAVQRSAQNWHGQGESDCLIKTKHCDGLRGC*RNVISAQCS 555
C T RS N H + CL+ +H G NVI +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 282 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 407
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 89 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 226
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 89 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 226
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 89 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 226
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 89 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 226
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 89 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 226
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 89 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 226
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 89 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 226
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 161 TTLHAWNETPCARRYY 208
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 153 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 64
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>01_01_1195 - 9567023-9567789,9567871-9568120
Length = 338
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/65 (33%), Positives = 27/65 (41%)
Frame = +3
Query: 216 APLPPNRVSNETMK*WFFSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPL 395
A L P R N W R R + A + R SSS+ S PA +P P P
Sbjct: 127 ARLFPGRTDNAVKNHWHVLMARRHREQSGA------FRRRKPSSSSASPAPAPAPPPPPQ 180
Query: 396 AVVSL 410
VV+L
Sbjct: 181 PVVAL 185
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 74 PPQSNSPPGSVLEPDHAGVLNGDE 145
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 339 ESSSTGSSFPADSPKPVPLAVVSLDSR 419
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
Length = 455
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -3
Query: 230 GRKRCAVD-NIGGRTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNN 54
GR+ C+VD +GG F GG A+ R+ + +P +G A + TGA + ++
Sbjct: 48 GRQECSVDLKLGGLGEFG--------GGGAQPRVAVAGEPAKGKGPAAAATGAA-AAASS 98
Query: 53 AGVLRP 36
A RP
Sbjct: 99 APAKRP 104
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 197 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGSLTGA 75
G+T+ R R A W RG A RR +LP G +AG G+
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +3
Query: 309 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 416
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,018,095
Number of Sequences: 37544
Number of extensions: 479962
Number of successful extensions: 1551
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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