Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0397
(712 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48582-1|CAA88465.1| 490|Caenorhabditis elegans Hypothetical pr... 32 0.47
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 29 3.3
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 3.3
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 29 4.3
U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile (un... 28 5.7
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (... 28 7.6
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (... 28 7.6
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 28 7.6
>Z48582-1|CAA88465.1| 490|Caenorhabditis elegans Hypothetical
protein F27E5.3 protein.
Length = 490
Score = 31.9 bits (69), Expect = 0.47
Identities = 22/75 (29%), Positives = 32/75 (42%)
Frame = +3
Query: 135 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMK*WFFSDDRAKRSPTYATPL 314
T+ S TS +P D P PP S++ K DD K++P Y +
Sbjct: 317 TSNVPSGTSEASITNPILHSPPSKFDNIPSPPKAFSDDLRK---SPDDDVKQNPQYGMDI 373
Query: 315 MSPYNARLESSSTGS 359
+SP ++SS GS
Sbjct: 374 VSPVQL-VKSSDKGS 387
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -3
Query: 650 WHGQGESDCLIKTKHCDGLRGC*RNVISAQCSECQREEIQASAG 519
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 267 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 386
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 267 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 386
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -3
Query: 650 WHGQGESDCLIKTKHCDGLRGC*RNVISAQCSECQREEIQASAG 519
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -3
Query: 638 GESDCLI-KTKHCDGLRGC*RNVISAQCSECQ 546
G D +I +K CDGL+ C C ECQ
Sbjct: 132 GSIDMIIPSSKRCDGLKDCSDGSDEENCKECQ 163
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -3
Query: 635 ESDCLIKTKHCDGLRGC*RNVISAQCSECQREEIQASAGKR 513
++ CL ++ CDG+ C C +C + SA K+
Sbjct: 428 DNKCLESSRRCDGVWDCEDKSDEKGCDKCPSRSFKCSADKK 468
>U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile
(unfertilizable) protein1 protein.
Length = 551
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -3
Query: 659 AQNWHGQGESDCLIKTKHCDGLRGC*RNVISAQCSECQREEIQASAGKR 513
A+N + + CL ++ CDG+ C C +C I+ +A K+
Sbjct: 422 AKNTQFKCDHKCLDSSRRCDGVWDCEDKSDEKGCDKCPSGTIKCAADKK 470
>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform b protein.
Length = 1069
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/79 (21%), Positives = 33/79 (41%)
Frame = +3
Query: 117 ITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMK*WFFSDDRAKRSP 296
+T+E T S +A P TKHR +++ ++ + +K + +R+P
Sbjct: 581 VTKEIDTGASAAANVP----ETKHRVSGTVVEGKDSKSQLLATKKVKKPTIKNTEHRRAP 636
Query: 297 TYATPLMSPYNARLESSST 353
P+ P + E+ T
Sbjct: 637 ESTVPIGPPVEVKAEAIQT 655
>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform a protein.
Length = 1065
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/79 (21%), Positives = 33/79 (41%)
Frame = +3
Query: 117 ITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMK*WFFSDDRAKRSP 296
+T+E T S +A P TKHR +++ ++ + +K + +R+P
Sbjct: 577 VTKEIDTGASAAANVP----ETKHRVSGTVVEGKDSKSQLLATKKVKKPTIKNTEHRRAP 632
Query: 297 TYATPLMSPYNARLESSST 353
P+ P + E+ T
Sbjct: 633 ESTVPIGPPVEVKAEAIQT 651
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +3
Query: 270 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 386
+DD R P + + L PY + SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,739,520
Number of Sequences: 27780
Number of extensions: 361597
Number of successful extensions: 991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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