Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0397
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   5.0  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   6.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.7  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = -3

Query: 605 CDGLRGC*RNVISAQCSECQREEIQASAGKR-RGNYDSLKVAKCLVI 468
           C+G +G  +  +    S   REE      KR R      +  KCL +
Sbjct: 127 CEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAM 173


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = -3

Query: 605 CDGLRGC*RNVISAQCSECQREEIQASAGKR-RGNYDSLKVAKCLVI 468
           C+G +G  +  +    S   REE      KR R      +  KCL +
Sbjct: 127 CEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAM 173


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 234 RVSNETMK*WFFSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSP 380
           R+S + +K    +D R   SP   TP+ + Y   +E+ +  S F  D+P
Sbjct: 13  RISPQILK----NDKRIYLSPR--TPIKNVYKNNIETKNQLSPFNIDTP 55


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +2

Query: 5   APREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAG-VLNGDERFRHVTTLHAWN 181
           +P   S+ + L+   +  +  +   Q NSP  +   P H+G   +     R  ++++ + 
Sbjct: 33  SPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMYPYV 92

Query: 182 ETPCARRYYRPRTASA 229
               A  +++ + A A
Sbjct: 93  SAAAAHHHHQQQQAVA 108


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 583 QHPRRPSQCFVLIRQSDSPCPCQ 651
           + P RPS C   +  ++SP  C+
Sbjct: 4   KQPNRPSYCTWELNATNSPHTCR 26


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 303 ATPLMSPYNARLESSSTGSSFP 368
           A  + SP   +   SSTGSS P
Sbjct: 347 AKQMASPEPPKSSESSTGSSIP 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,565
Number of Sequences: 438
Number of extensions: 4727
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)