Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0396
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 148 6e-36
03_01_0547 + 4093196-4093657,4094267-4095148 148 6e-36
03_01_0544 + 4082528-4082989,4083585-4084466 148 6e-36
03_01_0543 + 4076981-4077442,4078145-4079026 148 6e-36
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 50 2e-06
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 46 4e-05
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 46 4e-05
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 40 0.003
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 38 0.007
02_04_0462 + 23131433-23132836 35 0.063
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 32 0.59
11_06_0516 + 24502645-24504507 29 4.1
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 5.5
10_01_0013 + 154098-154101,154513-154673,154773-154847,155071-15... 29 5.5
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850... 28 7.2
06_03_1165 - 28106604-28106915 28 7.2
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 28 9.6
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 148 bits (358), Expect = 6e-36
Identities = 64/83 (77%), Positives = 76/83 (91%)
Frame = +3
Query: 6 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 185
P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT
Sbjct: 270 PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFT 329
Query: 186 AQVIVLNHPGQISNGYTPVLDCH 254
+QVI++NHPGQI NGY PVLDCH
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCH 352
Score = 115 bits (276), Expect = 5e-26
Identities = 52/83 (62%), Positives = 66/83 (79%)
Frame = +2
Query: 257 AHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 436
+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFA
Sbjct: 354 SHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFA 413
Query: 437 VRDMRQTVAVGVIKAVNFKEAGG 505
VRDMRQTVAVGVIK V K+ G
Sbjct: 414 VRDMRQTVAVGVIKNVEKKDPTG 436
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 148 bits (358), Expect = 6e-36
Identities = 64/83 (77%), Positives = 76/83 (91%)
Frame = +3
Query: 6 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 185
P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT
Sbjct: 270 PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFT 329
Query: 186 AQVIVLNHPGQISNGYTPVLDCH 254
+QVI++NHPGQI NGY PVLDCH
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCH 352
Score = 115 bits (276), Expect = 5e-26
Identities = 52/83 (62%), Positives = 66/83 (79%)
Frame = +2
Query: 257 AHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 436
+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFA
Sbjct: 354 SHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFA 413
Query: 437 VRDMRQTVAVGVIKAVNFKEAGG 505
VRDMRQTVAVGVIK V K+ G
Sbjct: 414 VRDMRQTVAVGVIKNVEKKDPTG 436
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 148 bits (358), Expect = 6e-36
Identities = 64/83 (77%), Positives = 76/83 (91%)
Frame = +3
Query: 6 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 185
P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT
Sbjct: 270 PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFT 329
Query: 186 AQVIVLNHPGQISNGYTPVLDCH 254
+QVI++NHPGQI NGY PVLDCH
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCH 352
Score = 115 bits (276), Expect = 5e-26
Identities = 52/83 (62%), Positives = 66/83 (79%)
Frame = +2
Query: 257 AHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 436
+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFA
Sbjct: 354 SHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFA 413
Query: 437 VRDMRQTVAVGVIKAVNFKEAGG 505
VRDMRQTVAVGVIK V K+ G
Sbjct: 414 VRDMRQTVAVGVIKNVEKKDPTG 436
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 148 bits (358), Expect = 6e-36
Identities = 64/83 (77%), Positives = 76/83 (91%)
Frame = +3
Query: 6 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 185
P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT
Sbjct: 270 PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFT 329
Query: 186 AQVIVLNHPGQISNGYTPVLDCH 254
+QVI++NHPGQI NGY PVLDCH
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCH 352
Score = 115 bits (276), Expect = 5e-26
Identities = 52/83 (62%), Positives = 66/83 (79%)
Frame = +2
Query: 257 AHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 436
+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFA
Sbjct: 354 SHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFA 413
Query: 437 VRDMRQTVAVGVIKAVNFKEAGG 505
VRDMRQTVAVGVIK V K+ G
Sbjct: 414 VRDMRQTVAVGVIKNVEKKDPTG 436
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 50.4 bits (115), Expect = 2e-06
Identities = 21/74 (28%), Positives = 41/74 (55%)
Frame = +2
Query: 263 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 442
++ +I ++++TGK+++ P+ + S A++ + K +CVE F LGR +R
Sbjct: 577 VSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLR 636
Query: 443 DMRQTVAVGVIKAV 484
T+AVG++ V
Sbjct: 637 SQGNTIAVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = +2
Query: 266 ACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 445
A + +I +D+ GK ++ P+ +KS A+V + P+CV+ F + LGR +R
Sbjct: 603 AARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRS 661
Query: 446 MRQTVAVGVI 475
T+AVGV+
Sbjct: 662 SGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = +2
Query: 266 ACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 445
A + +I +D+ GK ++ P+ +KS A+V + P+CV+ F + LGR +R
Sbjct: 603 AARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRS 661
Query: 446 MRQTVAVGVI 475
T+AVGV+
Sbjct: 662 SGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = +2
Query: 269 CKFAEIKEKVDRRTGKSTEVNPKS-------IKSGDAAIVNLVPSKPLCVESFQEFPPLG 427
C+ ++ E++D + K + K +K+G + + + +C+E+F +FP LG
Sbjct: 351 CEIVDLIEEIDMKKKKEADPKKKKPKRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLG 410
Query: 428 RFAVR 442
RF +R
Sbjct: 411 RFTLR 415
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = +3
Query: 6 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 185
P +V + + ++ A P +NV + + +++ G+V S NP +F
Sbjct: 262 PNKTNVKVIGISLDEHKVRRAGPAENVRVKLSGIEDEDIMAGFVL-SSIGNPVGAVTEFN 320
Query: 186 AQVIVLN--HPGQISNGYTPVLDCH 254
AQ+ +L + GY VL H
Sbjct: 321 AQLQILELLDNAIFTAGYKAVLHIH 345
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 38.3 bits (85), Expect = 0.007
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 6 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 185
P +V SV + ++ A PG+NV + + ++ G+V K NP ++F
Sbjct: 217 PNKANVKVISVHCDEDRVRSAAPGENVRVKLSGIEEDDITAGFVLSSIK-NPVSAISEFR 275
Query: 186 AQVIVLN--HPGQISNGYTPVLDCH 254
AQ+ +L + GY VL H
Sbjct: 276 AQLQILELLDNAIFTAGYKAVLHIH 300
>02_04_0462 + 23131433-23132836
Length = 467
Score = 35.1 bits (77), Expect = 0.063
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +3
Query: 27 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 206
V VEM + + +A+ GDNVG ++ + ++ RG V + P D V+ +
Sbjct: 324 VTGVEMFQKTMDDAMAGDNVGLLLRGMQKDDIERGMVLAKPASITPHTKFDAVVYVLKKD 383
Query: 207 HPGQIS---NGYTP 239
G+ S GY P
Sbjct: 384 EGGRHSPFFPGYRP 397
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 31.9 bits (69), Expect = 0.59
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +3
Query: 15 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 194
+ T V VEM + L GDNVG ++ + +++RG V K K F A++
Sbjct: 311 LKTTVTGVEMFKKILDHGEAGDNVGLLLRGLKRGDVQRGQVV--CKPGTVKTYQKFEAEI 368
Query: 195 IVL 203
VL
Sbjct: 369 YVL 371
>11_06_0516 + 24502645-24504507
Length = 620
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +3
Query: 36 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 215
VE HEAL AV D V S++E+ R GD + PP + V++ G
Sbjct: 114 VEQVHEALL-AVDAD---IEVIKASIREVYRFPCDGDERRGPPPPSTAPATGVVMTRRMG 169
Query: 216 QISNG 230
+I G
Sbjct: 170 EIRRG 174
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 693 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 613
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>10_01_0013 +
154098-154101,154513-154673,154773-154847,155071-155571,
155873-156214,158107-158234,158296-158342,160117-160196,
160569-160654,161409-161556,161947-162082,162160-162488,
162953-163169,164547-164572
Length = 759
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 284 FLQICRQCGQVAIQDWCVTV*DLTRMVKHNDLSC 183
FL + QC + +T LT MV+HN L C
Sbjct: 105 FLPLFVQCESIMTYQCAITSETLTHMVRHNALRC 138
>08_01_0871 +
8502396-8502417,8503606-8503732,8503891-8503990,
8504725-8504793,8504870-8505043,8505196-8505373,
8505462-8505594,8505702-8505864,8507031-8507181,
8507266-8507366,8507633-8507788,8508105-8508173,
8508256-8508324,8508403-8508540,8508639-8508767,
8509013-8509053,8510019-8510106,8510199-8510339,
8510428-8510553,8510671-8510736,8510994-8511291,
8511387-8511595,8511689-8511802
Length = 953
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 202 LTILVKSQTVTHQSWIATCPHC 267
L I+ + + +TH++W TC HC
Sbjct: 589 LDIIKEEKGLTHRTWQMTCSHC 610
>06_03_1165 - 28106604-28106915
Length = 103
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 26 SQVCGDAPRSSPRSCTWRQCRFQRKERVRQGIASWLCCW 142
SQ G A SSP + R R +R E + A L CW
Sbjct: 62 SQTGGAAASSSPAAACGRAARSKRSEEEKMQKAYHLVCW 100
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -3
Query: 480 ALMTPTATVCLMSRTAKRPRGGNSWKDSTHRGLEGTKLTMAASPDLMDFGLTSVDLPVRR 301
A+ P TV + T ++ RG K +GL G KLT S L LT ++ +R
Sbjct: 282 AIAYPMPTVNPVESTPRKGRGRPRKKPVEIKGLSGIKLTEDLSTALSPIALTCMEPKKKR 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,601,706
Number of Sequences: 37544
Number of extensions: 463424
Number of successful extensions: 1232
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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