Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0396
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 146 1e-35
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 146 1e-35
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 146 1e-35
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 42 7e-04
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 42 7e-04
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 39 0.005
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 30 2.1
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 30 2.1
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 30 2.1
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 3.7
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 4.9
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 8.6
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 146 bits (355), Expect = 1e-35
Identities = 66/84 (78%), Positives = 73/84 (86%)
Frame = +3
Query: 3 APANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADF 182
AP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F
Sbjct: 247 APQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTF 306
Query: 183 TAQVIVLNHPGQISNGYTPVLDCH 254
AQVI++NHPGQISNGYTPVLDCH
Sbjct: 307 HAQVIIMNHPGQISNGYTPVLDCH 330
Score = 128 bits (310), Expect = 3e-30
Identities = 60/84 (71%), Positives = 68/84 (80%)
Frame = +2
Query: 257 AHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 436
AHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFA
Sbjct: 332 AHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFA 391
Query: 437 VRDMRQTVAVGVIKAVNFKEAGGG 508
VRDMRQTVAVGVIK+V + G
Sbjct: 392 VRDMRQTVAVGVIKSVEKSDGSSG 415
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 146 bits (355), Expect = 1e-35
Identities = 66/84 (78%), Positives = 73/84 (86%)
Frame = +3
Query: 3 APANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADF 182
AP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F
Sbjct: 281 APQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTF 340
Query: 183 TAQVIVLNHPGQISNGYTPVLDCH 254
AQVI++NHPGQISNGYTPVLDCH
Sbjct: 341 HAQVIIMNHPGQISNGYTPVLDCH 364
Score = 128 bits (310), Expect = 3e-30
Identities = 60/84 (71%), Positives = 68/84 (80%)
Frame = +2
Query: 257 AHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 436
AHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFA
Sbjct: 366 AHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFA 425
Query: 437 VRDMRQTVAVGVIKAVNFKEAGGG 508
VRDMRQTVAVGVIK+V + G
Sbjct: 426 VRDMRQTVAVGVIKSVEKSDGSSG 449
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 146 bits (355), Expect = 1e-35
Identities = 66/84 (78%), Positives = 73/84 (86%)
Frame = +3
Query: 3 APANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADF 182
AP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F
Sbjct: 281 APQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTF 340
Query: 183 TAQVIVLNHPGQISNGYTPVLDCH 254
AQVI++NHPGQISNGYTPVLDCH
Sbjct: 341 HAQVIIMNHPGQISNGYTPVLDCH 364
Score = 128 bits (310), Expect = 3e-30
Identities = 60/84 (71%), Positives = 68/84 (80%)
Frame = +2
Query: 257 AHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 436
AHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFA
Sbjct: 366 AHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFA 425
Query: 437 VRDMRQTVAVGVIKAVNFKEAGGG 508
VRDMRQTVAVGVIK+V + G
Sbjct: 426 VRDMRQTVAVGVIKSVEKSDGSSG 449
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +2
Query: 296 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 472
+D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527
Query: 473 IKAV 484
+K V
Sbjct: 528 LKVV 531
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +3
Query: 60 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTP 239
+ V GDN+ F +K + EL+ G++ S ++ K F A+V+VL H I++GY+
Sbjct: 392 ERVVAGDNIKFKLKGIEENELQGGFII-CSPDSLAKTGRVFDAEVLVLEHRSIIASGYSC 450
Query: 240 VL 245
VL
Sbjct: 451 VL 452
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = +2
Query: 263 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 442
+ C F + +++ G+ + P+ I G +A+V + + +E+F LGR R
Sbjct: 515 VPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFR 574
Query: 443 DMRQTVAVGVIKAV 484
T+A G+++ V
Sbjct: 575 AGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = +2
Query: 263 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 442
+ C F + +++ G+ + P+ I G +A+V + + +E+F LGR R
Sbjct: 533 VPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFR 592
Query: 443 DMRQTVAVGVIKAV 484
T+A G+++ V
Sbjct: 593 AGGNTIAAGIVEKV 606
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +3
Query: 27 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 206
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 207 HPGQISNGYTPVL 245
HP I Y +L
Sbjct: 479 HPTTIKPNYQAML 491
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 15 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 137
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 296 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 15 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 137
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 15 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 137
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +3
Query: 624 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 731
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 27 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 206
V S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLC 508
Query: 207 H 209
H
Sbjct: 509 H 509
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -2
Query: 193 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 62
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,128,769
Number of Sequences: 27780
Number of extensions: 395146
Number of successful extensions: 1176
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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