Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0396
(779 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 149 3e-36
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 149 3e-36
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 149 3e-36
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 149 3e-36
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 105 3e-23
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 57 1e-08
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 47 2e-05
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 35 0.070
At4g27900.2 68417.m04005 expressed protein 32 0.49
At4g27900.1 68417.m04004 expressed protein 32 0.49
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 32 0.49
At4g37520.1 68417.m05308 peroxidase 50 (PER50) (P50) (PRXR2) ide... 30 1.5
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 30 2.0
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 29 4.6
At5g42440.1 68418.m05166 protein kinase family protein contains ... 28 6.0
At5g42860.1 68418.m05224 expressed protein 25 7.1
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 28 8.0
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 149 bits (360), Expect = 3e-36
Identities = 64/84 (76%), Positives = 77/84 (91%)
Frame = +3
Query: 3 APANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADF 182
AP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+F
Sbjct: 269 APTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANF 328
Query: 183 TAQVIVLNHPGQISNGYTPVLDCH 254
T+QVI++NHPGQI NGY PVLDCH
Sbjct: 329 TSQVIIMNHPGQIGNGYAPVLDCH 352
Score = 115 bits (276), Expect = 4e-26
Identities = 52/83 (62%), Positives = 67/83 (80%)
Frame = +2
Query: 257 AHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 436
+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFA
Sbjct: 354 SHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFA 413
Query: 437 VRDMRQTVAVGVIKAVNFKEAGG 505
VRDMRQTVAVGVIK+V+ K+ G
Sbjct: 414 VRDMRQTVAVGVIKSVDKKDPTG 436
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 149 bits (360), Expect = 3e-36
Identities = 64/84 (76%), Positives = 77/84 (91%)
Frame = +3
Query: 3 APANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADF 182
AP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+F
Sbjct: 269 APTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANF 328
Query: 183 TAQVIVLNHPGQISNGYTPVLDCH 254
T+QVI++NHPGQI NGY PVLDCH
Sbjct: 329 TSQVIIMNHPGQIGNGYAPVLDCH 352
Score = 115 bits (276), Expect = 4e-26
Identities = 52/83 (62%), Positives = 67/83 (80%)
Frame = +2
Query: 257 AHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 436
+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFA
Sbjct: 354 SHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFA 413
Query: 437 VRDMRQTVAVGVIKAVNFKEAGG 505
VRDMRQTVAVGVIK+V+ K+ G
Sbjct: 414 VRDMRQTVAVGVIKSVDKKDPTG 436
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 149 bits (360), Expect = 3e-36
Identities = 64/84 (76%), Positives = 77/84 (91%)
Frame = +3
Query: 3 APANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADF 182
AP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+F
Sbjct: 269 APTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANF 328
Query: 183 TAQVIVLNHPGQISNGYTPVLDCH 254
T+QVI++NHPGQI NGY PVLDCH
Sbjct: 329 TSQVIIMNHPGQIGNGYAPVLDCH 352
Score = 115 bits (276), Expect = 4e-26
Identities = 52/83 (62%), Positives = 67/83 (80%)
Frame = +2
Query: 257 AHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 436
+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFA
Sbjct: 354 SHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFA 413
Query: 437 VRDMRQTVAVGVIKAVNFKEAGG 505
VRDMRQTVAVGVIK+V+ K+ G
Sbjct: 414 VRDMRQTVAVGVIKSVDKKDPTG 436
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 149 bits (360), Expect = 3e-36
Identities = 64/84 (76%), Positives = 77/84 (91%)
Frame = +3
Query: 3 APANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADF 182
AP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+F
Sbjct: 269 APTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANF 328
Query: 183 TAQVIVLNHPGQISNGYTPVLDCH 254
T+QVI++NHPGQI NGY PVLDCH
Sbjct: 329 TSQVIIMNHPGQIGNGYAPVLDCH 352
Score = 115 bits (276), Expect = 4e-26
Identities = 52/83 (62%), Positives = 67/83 (80%)
Frame = +2
Query: 257 AHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 436
+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFA
Sbjct: 354 SHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFA 413
Query: 437 VRDMRQTVAVGVIKAVNFKEAGG 505
VRDMRQTVAVGVIK+V+ K+ G
Sbjct: 414 VRDMRQTVAVGVIKSVDKKDPTG 436
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 105 bits (252), Expect = 3e-23
Identities = 47/83 (56%), Positives = 63/83 (75%)
Frame = +2
Query: 257 AHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 436
+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P+KP+ VE++ +PPLGRFA
Sbjct: 20 SHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPMVVEAYSAYPPLGRFA 79
Query: 437 VRDMRQTVAVGVIKAVNFKEAGG 505
+RDMRQTV VGVIK+V K+ G
Sbjct: 80 IRDMRQTVGVGVIKSVVKKDPSG 102
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3
Query: 201 LNHPGQISNGYTPVLDCH 254
+NH GQI NGYTPVLDCH
Sbjct: 1 MNHLGQIKNGYTPVLDCH 18
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 57.2 bits (132), Expect = 1e-08
Identities = 23/69 (33%), Positives = 41/69 (59%)
Frame = +2
Query: 269 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 448
C+ E+K ++D +T K + +K+G A + + + +C+E F +FP LGRF +R
Sbjct: 454 CEIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTE 513
Query: 449 RQTVAVGVI 475
+T+AVG +
Sbjct: 514 GKTIAVGKV 522
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 6 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 185
P +V ++ + ++ A PG+N+ + + +++ G+V S NP +F
Sbjct: 365 PNKEQVKVVAIYCDEDKVKRAGPGENLRVRITGIEDEDILSGFVL-SSIVNPVPAVTEFV 423
Query: 186 AQVIVLN--HPGQISNGYTPVLDCH 254
AQ+ +L + GY +L H
Sbjct: 424 AQLQILELLDNAIFTAGYKAILHIH 448
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/73 (28%), Positives = 42/73 (57%)
Frame = +2
Query: 266 ACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 445
A ++ +D +TG+ T+ +P+ + + +A++ + P+CVE+F E LGR +R
Sbjct: 591 AATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRALGRVFLRS 650
Query: 446 MRQTVAVGVIKAV 484
+TVA+G + +
Sbjct: 651 SGRTVAMGKVTRI 663
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 34.7 bits (76), Expect = 0.070
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 27 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 137
V VEM + L EA+ GDNVG ++ + +++RG V
Sbjct: 333 VTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMV 369
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.49
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 332 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 424
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.49
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 332 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 424
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3
Query: 15 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 194
+ + V VEM + L GDNVG ++ + ++++RG V +K K F A++
Sbjct: 312 LKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKREDIQRGMVI--AKPGSCKTYKKFEAEI 369
Query: 195 IVL 203
VL
Sbjct: 370 YVL 372
>At4g37520.1 68417.m05308 peroxidase 50 (PER50) (P50) (PRXR2)
identical to SP|Q43731 Peroxidase 50 precursor (EC
1.11.1.7) (Atperox P50) (PRXR2) (ATP9a)] {Arabidopsis
thaliana}
Length = 329
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 178 ILQLKSLCLTILVKSQTVTHQSWIATCPHCLQICRN 285
+L L SLCLT+ + S + + +CP+ QI RN
Sbjct: 10 LLLLLSLCLTLDLSSAQLRRNFYAGSCPNVEQIVRN 45
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 248 LPPAHIAC-KFAEIKEKVDRRTGKSTEVNPKSI 343
+P AH +F + KEK+DR GK E+N K +
Sbjct: 249 VPYAHYGLMRFPKPKEKIDREGGKPLEINVKKL 281
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +3
Query: 654 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 752
I+ K C+ V LFY ++ N S FCY C+L+C
Sbjct: 619 IYLKPCHIFKVGLFYKEVEIARNDGNSRLFCYICRLRC 656
>At5g42440.1 68418.m05166 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 359
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 569 AVNSSSYFLPLVAFSAALVTCHHQPP 492
A + SS FL L+ F+ ++ C +PP
Sbjct: 10 ATSISSIFLLLIVFTVVMIVCRRRPP 35
>At5g42860.1 68418.m05224 expressed protein
Length = 320
Score = 25.0 bits (52), Expect(2) = 7.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 525 RKGHQGQEVARAVNSTIFHTTAILHSPKGVSKEKRATNS 641
R H G++ A T FH+T +L SP G +++S
Sbjct: 33 RDSHDGEKTA-----TSFHSTPVLTSPMGSPPHSHSSSS 66
Score = 21.4 bits (43), Expect(2) = 7.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 381 PSLYV*SPSRNSH 419
P+ +V SPSR+SH
Sbjct: 24 PAYFVQSPSRDSH 36
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +3
Query: 654 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 752
I+ K C+ V L+Y ++ N S FCY C+L+C
Sbjct: 579 IYLKPCHIFKVGLYYKEVEIARNDGNSRLFCYTCELRC 616
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,101,164
Number of Sequences: 28952
Number of extensions: 363069
Number of successful extensions: 1019
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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