Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0393
(758 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK026111-1|BAB15364.1| 384|Homo sapiens protein ( Homo sapiens ... 31 3.4
AK024429-1|BAB15719.1| 1430|Homo sapiens FLJ00018 protein protein. 31 3.4
X04701-1|CAA28407.1| 705|Homo sapiens protein ( Human mRNA for ... 31 4.5
M14058-1|AAA51851.1| 705|Homo sapiens C1R protein. 31 4.5
BC101271-1|AAI01272.1| 441|Homo sapiens TUBB8 protein protein. 31 4.5
BC101270-1|AAI01271.1| 441|Homo sapiens TUBB8 protein protein. 31 4.5
BC035220-1|AAH35220.1| 705|Homo sapiens complement component 1,... 31 4.5
AL713922-4|CAI16221.1| 435|Homo sapiens novel protein similar t... 31 4.5
AL713922-3|CAI16220.1| 410|Homo sapiens novel protein similar t... 31 4.5
AF355127-1|AAL32434.1| 444|Homo sapiens beta-tubulin 4Q protein. 31 4.5
AB083037-1|BAC19850.2| 705|Homo sapiens r subcomponent of compl... 31 4.5
AJ310433-1|CAC83724.1| 248|Homo sapiens NB1 glycoprotein protein. 31 6.0
>AK026111-1|BAB15364.1| 384|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22458 fis, clone HRC10001. ).
Length = 384
Score = 31.5 bits (68), Expect = 3.4
Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Frame = -2
Query: 520 FLHVTFRALGRNHIASTPARAIAMLCFN*TVGFPLSVPVLS*PLNGGRTESCRSRTKRNR 341
++H R NH AS PA+A +L N P S PVL PL T S R+
Sbjct: 209 WIHCLQRLFFENHPASIPAKAKQVLLENSLHCAPKSKPVLE-PL----TPPLGSPRPRDA 263
Query: 340 HDLTARKIRGRPENAGPDPVRNVRRFSR-VHIKYIQF 233
T + R + GP +R RR S V Y+ F
Sbjct: 264 RSFTPGR-RNTAPSPGPSVIRRGRRQSEPVKDPYVMF 299
>AK024429-1|BAB15719.1| 1430|Homo sapiens FLJ00018 protein protein.
Length = 1430
Score = 31.5 bits (68), Expect = 3.4
Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Frame = -2
Query: 520 FLHVTFRALGRNHIASTPARAIAMLCFN*TVGFPLSVPVLS*PLNGGRTESCRSRTKRNR 341
++H R NH AS PA+A +L N P S PVL PL T S R+
Sbjct: 446 WIHCLQRLFFENHPASIPAKAKQVLLENSLHCAPKSKPVLE-PL----TPPLGSPRPRDA 500
Query: 340 HDLTARKIRGRPENAGPDPVRNVRRFSR-VHIKYIQF 233
T + R + GP +R RR S V Y+ F
Sbjct: 501 RSFTPGR-RNTAPSPGPSVIRRGRRQSEPVKDPYVMF 536
>X04701-1|CAA28407.1| 705|Homo sapiens protein ( Human mRNA for
complement component C1r. ).
Length = 705
Score = 31.1 bits (67), Expect = 4.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 612 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 722
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>M14058-1|AAA51851.1| 705|Homo sapiens C1R protein.
Length = 705
Score = 31.1 bits (67), Expect = 4.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 612 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 722
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>BC101271-1|AAI01272.1| 441|Homo sapiens TUBB8 protein protein.
Length = 441
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 221 MRPQKLYIFNMNSRKSSYVSDWIRTRVLRPSADLPSR 331
MR +FN+ + SSY +DW+ V D+P R
Sbjct: 320 MREVDEQMFNIQDKNSSYFADWLPNNVKTAVCDIPPR 356
>BC101270-1|AAI01271.1| 441|Homo sapiens TUBB8 protein protein.
Length = 441
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 221 MRPQKLYIFNMNSRKSSYVSDWIRTRVLRPSADLPSR 331
MR +FN+ + SSY +DW+ V D+P R
Sbjct: 320 MREVDEQMFNIQDKNSSYFADWLPNNVKTAVCDIPPR 356
>BC035220-1|AAH35220.1| 705|Homo sapiens complement component 1, r
subcomponent protein.
Length = 705
Score = 31.1 bits (67), Expect = 4.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 612 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 722
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>AL713922-4|CAI16221.1| 435|Homo sapiens novel protein similar to
beta-tubulin 4Q (TUBB4Q)kinase) II gamma protein.
Length = 435
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 221 MRPQKLYIFNMNSRKSSYVSDWIRTRVLRPSADLPSR 331
MR +FN+ + SSY +DW+ V D+P R
Sbjct: 323 MREVDEQMFNIQDKNSSYFADWLPNNVKTAVCDIPPR 359
>AL713922-3|CAI16220.1| 410|Homo sapiens novel protein similar to
beta-tubulin 4Q (TUBB4Q)kinase) II gamma protein.
Length = 410
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 221 MRPQKLYIFNMNSRKSSYVSDWIRTRVLRPSADLPSR 331
MR +FN+ + SSY +DW+ V D+P R
Sbjct: 289 MREVDEQMFNIQDKNSSYFADWLPNNVKTAVCDIPPR 325
>AF355127-1|AAL32434.1| 444|Homo sapiens beta-tubulin 4Q protein.
Length = 444
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 221 MRPQKLYIFNMNSRKSSYVSDWIRTRVLRPSADLPSR 331
MR +FN+ + SSY +DW+ V D+P R
Sbjct: 323 MREVDEQMFNIQDKNSSYFADWLPNNVKTAVCDIPPR 359
>AB083037-1|BAC19850.2| 705|Homo sapiens r subcomponent of
complement component 1 protein.
Length = 705
Score = 31.1 bits (67), Expect = 4.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 612 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 722
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>AJ310433-1|CAC83724.1| 248|Homo sapiens NB1 glycoprotein protein.
Length = 248
Score = 30.7 bits (66), Expect = 6.0
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Frame = +2
Query: 323 PSRKVVSVSFRARSARFCTTAVQRSAQNWHGQGESDC-LIKTKHCDGPRGC*RNVISAQC 499
P ++S +F R FC V S W Q +D ++ C GC C
Sbjct: 93 PGLSLISYTFVCRQEDFCNNLVN-SLPLWAPQPPADPGSLRCPVCLSMEGCLEGTTEEIC 151
Query: 500 SECNVKKFKQA-RVNGGSNYDSLKVAKCLVI*LVTRMNGLTRF 625
+ + R+ GG + +L+V C+ + +NG F
Sbjct: 152 PKGTTHCYDGLLRLRGGGIFSNLRVQGCMPQPVCNLLNGTQEF 194
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,949,169
Number of Sequences: 237096
Number of extensions: 2460720
Number of successful extensions: 5831
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5830
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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