Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0393
(758 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 29 2.7
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 2.7
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 2.7
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 2.7
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 2.7
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 3.6
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 3.6
AF039047-11|AAB94230.1| 354|Caenorhabditis elegans Prion-like-(... 29 4.7
Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical pr... 28 6.3
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 28 6.3
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 28 6.3
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 191 T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 78
T +++ID T H PHP+ VQ T+ V+ P V+ P+
Sbjct: 904 TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 361 SRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFSRVHIKYIQFLRPHYIKI--LTR*NEH 188
S KR L R+ RPE + S V + +R + +KI LT NE+
Sbjct: 506 SMKKRIARALIRRRSTTRPERGSSS--NSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 563
Query: 187 NARTSTRPGTGRIRFPSKPDT 125
TS++PG R+ P+K DT
Sbjct: 564 RGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 361 SRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFSRVHIKYIQFLRPHYIKI--LTR*NEH 188
S KR L R+ RPE + S V + +R + +KI LT NE+
Sbjct: 475 SMKKRIARALIRRRSTTRPERGSSS--NSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 532
Query: 187 NARTSTRPGTGRIRFPSKPDT 125
TS++PG R+ P+K DT
Sbjct: 533 RGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 361 SRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFSRVHIKYIQFLRPHYIKI--LTR*NEH 188
S KR L R+ RPE + S V + +R + +KI LT NE+
Sbjct: 506 SMKKRIARALIRRRSTTRPERGSSS--NSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 563
Query: 187 NARTSTRPGTGRIRFPSKPDT 125
TS++PG R+ P+K DT
Sbjct: 564 RGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 361 SRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFSRVHIKYIQFLRPHYIKI--LTR*NEH 188
S KR L R+ RPE + S V + +R + +KI LT NE+
Sbjct: 475 SMKKRIARALIRRRSTTRPERGSSS--NSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 532
Query: 187 NARTSTRPGTGRIRFPSKPDT 125
TS++PG R+ P+K DT
Sbjct: 533 RGETSSQPGRDRLAPPNKTDT 553
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 407 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 505
W+ G C+ + K CDG + C QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 407 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 505
W+ G C+ + K CDG + C QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299
>AF039047-11|AAB94230.1| 354|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 51
protein.
Length = 354
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -1
Query: 176 IDQTRHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLGD 21
+D + P P P Q H P +R NP P+ + P+ L L A H+GD
Sbjct: 53 VDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIGD 104
>Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical
protein T10H4.10 protein.
Length = 504
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 267 RLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFN 392
+L R G +G IF VR RF++ R D++ PFN
Sbjct: 205 KLVSRLAKGFENTGFLDIFCPVRILESRFLKWRQDTIFEPFN 246
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 242 IFNMNSRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARS 364
+ N+ ++ SSY DWI V D+P R + +S +F S
Sbjct: 330 MLNIQNKNSSYFVDWIPNNVKTAVCDIPPRGLKMSATFIGNS 371
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 242 IFNMNSRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARS 364
+ N+ ++ SSY DWI V D+P R + +S +F S
Sbjct: 330 MLNIQNKNSSYFVDWIPNNVKTAVCDIPPRGLKMSATFIGNS 371
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,544,885
Number of Sequences: 27780
Number of extensions: 376256
Number of successful extensions: 1064
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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