Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0393
(758 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 4.1
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 4.1
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 23 4.1
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 22 5.4
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 5.4
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 5.4
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 5.4
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 22 5.4
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 22 5.4
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 5.4
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 5.4
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 21 9.5
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 4.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 144 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 242
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 4.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 144 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 242
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 22.6 bits (46), Expect = 4.1
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2
Query: 416 QGESDCLIKTKHCDGPRGC*RNVISAQCSECNVKKFK 526
+G+ + + C G +V +C+EC + KFK
Sbjct: 235 KGDGKWYLPSGGCHCKPGYQADVEKQECTECPIGKFK 271
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 22.2 bits (45), Expect = 5.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 265 FSRVHIKYIQFLRPHYIKILTR 200
++RVH+ QFL+ +LTR
Sbjct: 126 WARVHVNEGQFLKAFVAAVLTR 147
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 5.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 379 RTESCRSRTKRNRHD 335
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 5.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 379 RTESCRSRTKRNRHD 335
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 5.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 379 RTESCRSRTKRNRHD 335
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 5.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 379 RTESCRSRTKRNRHD 335
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 5.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 379 RTESCRSRTKRNRHD 335
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 22.2 bits (45), Expect = 5.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 379 RTESCRSRTKRNRHD 335
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 22.2 bits (45), Expect = 5.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 379 RTESCRSRTKRNRHD 335
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.4 bits (43), Expect = 9.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 754 ATPLMSPYNARLESSSTGSSFP 689
A + SP + SSTGSS P
Sbjct: 347 AKQMASPEPPKSSESSTGSSIP 368
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,055
Number of Sequences: 438
Number of extensions: 4894
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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