Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0392
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    31   0.18 
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.9  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    27   3.9  
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    26   5.2  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    26   5.2  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    26   6.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.1  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   9.1  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 173 HNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTRE 66
           +++ YN+   M TS+C+C++  +  YGGN A    E
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -3

Query: 113 RDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYN 9
           R R+V G ++A  + + W F   +Y   ++F+++N
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -3

Query: 176 AHNTKYNQYLKMSTSTCNCNARDRVVYGGNSA 81
           +HN  +N + + S ++ +  +R+ V+  GNS+
Sbjct: 616 SHNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +1

Query: 595 KENYSPIYLTFLTIHQIKRNYNA-----LIRKSKRTLTITVYNSRISCEYV 732
           +E  +  Y     I Q K  YNA     ++R S R +T  + +SR++ +YV
Sbjct: 24  REGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 74


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +1

Query: 595 KENYSPIYLTFLTIHQIKRNYNA-----LIRKSKRTLTITVYNSRISCEYV 732
           +E  +  Y     I Q K  YNA     ++R S R +T  + +SR++ +YV
Sbjct: 24  REGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 74


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 22/76 (28%), Positives = 39/76 (51%)
 Frame = +1

Query: 49  GWKNHCSLVLSALLPPYTTRSRALQLQVDVLIFKYWLYLVLWALKYTLLFSHKVMNFQLT 228
           GWK+  S    A++   +TR     L V ++I+ Y L +    +++ +LFS+        
Sbjct: 152 GWKSWTS-ASGAVILSSSTR----MLPVFMVIWDYDLSIAATVVEWVVLFSN-------V 199

Query: 229 SSVCLSTPSRRQFSHS 276
            ++C+ T SRR F+ S
Sbjct: 200 DALCILTGSRRTFTDS 215


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 454 EPTPKESEPFKSVVPDNKHSVIHSIA 531
           +P P  S P  +VVP NK +   ++A
Sbjct: 285 QPVPMTSSPAMAVVPQNKTAATSTLA 310


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 20/85 (23%), Positives = 37/85 (43%)
 Frame = +1

Query: 448 PYEPTPKESEPFKSVVPDNKHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTF 627
           PY+P    S PF +V+     SV+H   PF        + ++ +   + +     +    
Sbjct: 18  PYDPPQGSSRPFFTVLKRAFSSVLH---PFTSGLDEKASGTASKDRKSGRAGTKSLLTPE 74

Query: 628 LTIHQIKRNYNALIRKSKRTLTITV 702
           LT H + ++   +IR S R+   T+
Sbjct: 75  LTPHYLGKS-PRIIRVSNRSHVRTI 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,979
Number of Sequences: 5004
Number of extensions: 59946
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)