Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0392
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0340 + 24517562-24520318 31 0.77
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 31 1.3
07_03_1117 - 24096425-24097853,24097894-24098336 30 1.8
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614... 28 7.2
09_02_0504 - 10013784-10014041,10014558-10014660,10014932-100150... 28 9.5
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 28 9.5
01_01_0112 - 838809-839748,839781-839908,840203-840274,840306-84... 28 9.5
01_01_0102 + 769442-770159,770710-770805,771340-771363,771470-77... 28 9.5
>04_04_0340 + 24517562-24520318
Length = 918
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/76 (22%), Positives = 39/76 (51%)
Frame = +1
Query: 541 LSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRIS 720
L+T + + RSW +++ +SP+ TI+ + A KS+ + ++ ++
Sbjct: 169 LATIRSRKEADNRSWCIVEQVFSPLLKLLKTINHLVSEAAARNNKSENYKILVKIDAEVN 228
Query: 721 CEYVKTVANVINKNKN 768
C ++ ++I++NKN
Sbjct: 229 C--LQDALDLIDRNKN 242
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 30.7 bits (66), Expect = 1.3
Identities = 26/96 (27%), Positives = 41/96 (42%)
Frame = +1
Query: 34 FSYLAGWKNHCSLVLSALLPPYTTRSRALQLQVDVLIFKYWLYLVLWALKYTLLFSHKVM 213
+ L WK+ + S + A++ Q D YWL L L L S K
Sbjct: 1810 YQCLLHWKSFETAKTSVFDSILQEINSAIEAQHDTRSLAYWLSN-LSTLSVLLQLSFK-- 1866
Query: 214 NFQLTSSVCLSTPSRRQFSHSRDWLWNRASERGCSF 321
T+ +STP RR+FS+ R + ++ S G ++
Sbjct: 1867 ----TTRAAISTPHRRRFSYERIFQASQTSNSGLAY 1898
>07_03_1117 - 24096425-24097853,24097894-24098336
Length = 623
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3
Query: 581 DLLEEHVRLFEVLRKNGAIEWITECLLSGTTD 486
D ++E V L E+L +N E++T+C L G TD
Sbjct: 41 DAVQERV-LGEILGRNAGTEYLTKCGLDGATD 71
>10_07_0057 +
12460986-12461036,12461108-12461161,12461420-12461482,
12461666-12461716,12461996-12462057,12462156-12462318,
12462829-12462939,12463029-12463166,12463248-12463322,
12463420-12463540,12464827-12464981,12465080-12465154,
12465270-12465473,12465670-12465786
Length = 479
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 351 MMSLKLNGKYFLTISCPLPTHSL*QYSMVFR 443
MM L + GK I CP+P+HSL SMV R
Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLR 181
>09_02_0504 - 10013784-10014041,10014558-10014660,10014932-10015093,
10015416-10015549,10015633-10015716,10015839-10016129,
10016362-10016694,10016823-10016965,10017273-10017429,
10017513-10017616,10017728-10017888,10017971-10018287,
10018396-10018677,10018759-10019226,10019338-10019391,
10019689-10019742,10019943-10020021,10020108-10020196,
10021153-10021273,10022321-10022637
Length = 1236
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +1
Query: 97 YTTRSRALQLQVDVLI-FKYWLYLVLWALKYTLLFSHKVMNFQLTSSVCLSTPSRRQFSH 273
Y+ S AL ++ V + YW+ V W L L +N + + V +S F +
Sbjct: 1142 YSALSYALGQRIPVWWRWYYWMCPVAWTLNGLLTSQFGDVNDKFNNGVSVSDFIESYFGY 1201
Query: 274 SRDWLW 291
+D LW
Sbjct: 1202 KQDLLW 1207
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 373 GSTF*QYPVRCRPTACSSTPWCFVYPYEPTPKESEPFKSVVPDNKHS 513
G T PV +PT S+P Y PT KE+ P KSV K S
Sbjct: 342 GKTSTPKPVN-KPTDSVSSPPDRSYKSAPTEKENPPTKSVAEKKKDS 387
>01_01_0112 -
838809-839748,839781-839908,840203-840274,840306-840374,
840634-840698,840732-840907,841006-841757
Length = 733
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 512 ECLLSGTTDLNGSDSLGVGSYG*TKHHGVLL 420
+ +L T L GS+ LG G YG + + GVLL
Sbjct: 414 QLMLGPTRSLQGSEKLGQGGYG-SVYKGVLL 443
>01_01_0102 +
769442-770159,770710-770805,771340-771363,771470-772542
Length = 636
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +3
Query: 438 FRLSV*TDT*GVRAIQVCCSGQQTFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGELFPYL 617
FRLS + G +Q+ CSGQ T D PVL K ++++ V++ P +
Sbjct: 52 FRLSTQPPSCGAPGMQLSCSGQDTI---LDHPVLGS-CKVTMIYYRHVIM----NAIPLV 103
Query: 618 FNIPH 632
++PH
Sbjct: 104 DSLPH 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,336,624
Number of Sequences: 37544
Number of extensions: 364787
Number of successful extensions: 976
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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