Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0392
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       33   0.34 
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)                      32   0.45 
SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)                 30   1.8  
SB_27772| Best HMM Match : Ank (HMM E-Value=0.98)                      29   3.1  
SB_2010| Best HMM Match : Ribosomal_L32p (HMM E-Value=7.5e-06)         29   3.1  
SB_46038| Best HMM Match : TRI5 (HMM E-Value=3.5)                      29   5.5  
SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)           28   7.3  
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
 Frame = +1

Query: 538 FLSTSNNLTCSSRRSWSTMKENYSPIYLTFLT-----IHQIKRNYNALIRKSKRTLTITV 702
           +L+ S N    S +  +T+ +NYS +   +LT     ++ + +NY+ L   SK  LT++ 
Sbjct: 69  YLTLSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTL---SKNYLTLSK 125

Query: 703 YNSRISCEYVKTVANVINKNKN 768
             S +S  Y+    N    +KN
Sbjct: 126 NYSTLSKNYLTLSKNYSTLSKN 147



 Score = 32.3 bits (70), Expect = 0.45
 Identities = 22/73 (30%), Positives = 37/73 (50%)
 Frame = +1

Query: 550 SNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRISCEY 729
           S N    S +  +T+ +NYS +   +LT   + +NY+ L   SK  LT++   S +S  Y
Sbjct: 2   SKNYLTLSIKVLNTLSKNYSTLSRNYLT---LSKNYSTL---SKNYLTLSKNYSTLSKNY 55

Query: 730 VKTVANVINKNKN 768
           +    N +  +KN
Sbjct: 56  LTLSKNYLTLSKN 68



 Score = 31.5 bits (68), Expect = 0.78
 Identities = 21/80 (26%), Positives = 42/80 (52%)
 Frame = +1

Query: 514 VIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLT 693
           V+++++  + + S N    S +  +T+ +NYS +   +LT   + +NY+ L   SK  LT
Sbjct: 83  VLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLT---LSKNYSTL---SKNYLT 136

Query: 694 ITVYNSRISCEYVKTVANVI 753
           ++   S +S  Y+    N +
Sbjct: 137 LSKNYSTLSKNYLTLSKNYL 156



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = +1

Query: 541 LSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRK----SKRTLTITVYN 708
           L+T +    +  R++ T+ +NYS +   +LT   + +NY+ L +     SK  LT++   
Sbjct: 13  LNTLSKNYSTLSRNYLTLSKNYSTLSKNYLT---LSKNYSTLSKNYLTLSKNYLTLSKNY 69

Query: 709 SRISCEYVKTVANVIN 756
             +S  Y+     V+N
Sbjct: 70  LTLSKNYLTLSIKVLN 85


>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
          Length = 468

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 22/73 (30%), Positives = 37/73 (50%)
 Frame = +1

Query: 550 SNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRISCEY 729
           S N    S +  +T+ +NYS +   +LT   + +NY+ L   SK  LT++   S +S  Y
Sbjct: 2   SKNYLTLSIKVLNTLSKNYSTLSRNYLT---LSKNYSTL---SKNYLTLSKNYSTLSKNY 55

Query: 730 VKTVANVINKNKN 768
           +    N +  +KN
Sbjct: 56  LTLSKNYLTLSKN 68



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = +1

Query: 538 FLSTSNNLTCSSRRSWSTMKENYSPIYLTFLT-----IHQIKRNYNALIRKSKRTLTITV 702
           +L+ S N    S +  +T+ +NYS +   +LT     ++ + +NY+ L   SK  LT++ 
Sbjct: 69  YLTLSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTL---SKNYLTLSK 125

Query: 703 YNSRISCEY 729
             S +S  Y
Sbjct: 126 NYSTLSKNY 134



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = +1

Query: 541 LSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRK----SKRTLTITVYN 708
           L+T +    +  R++ T+ +NYS +   +LT   + +NY+ L +     SK  LT++   
Sbjct: 13  LNTLSKNYSTLSRNYLTLSKNYSTLSKNYLT---LSKNYSTLSKNYLTLSKNYLTLSKNY 69

Query: 709 SRISCEYVKTVANVIN 756
             +S  Y+     V+N
Sbjct: 70  LTLSKNYLTLSIKVLN 85


>SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)
          Length = 1191

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = +1

Query: 439 FVY-PYEPTPKESEPFKSVVPDNKHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPI 615
           FV+ P +P P   +P     PDN  +VI     +F      L     + W  ++   +  
Sbjct: 104 FVFRPDQPNPDGGDPIPGENPDNYKTVIEKFDQYFTKRDPQLML-REKFWLQLQREQNQS 162

Query: 616 YLTFLTIHQIKRNYNALIRKSKRTLTI 696
           + +++    +  NY     K+K+T TI
Sbjct: 163 FDSWVVTKHLVGNY-----KNKKTATI 184


>SB_27772| Best HMM Match : Ank (HMM E-Value=0.98)
          Length = 340

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = -3

Query: 602 FSFMVDQDLLEEHVRLFEVLRKNGAI---EWITECLLSGTTDLNGSDSLGVGSYG*TKHH 432
           F  ++++D+  E VR F  LR +      +++T  LLS T DLN  D L +      +  
Sbjct: 25  FDLVLNEDV--EGVRSFFDLRPDFLFRTRDFVTRALLSDTIDLNRGDILKIFLDEQARIG 82

Query: 431 GVLLQAVGRQRTGYCQKVLP 372
           G L  AV +      Q +LP
Sbjct: 83  GALFNAVRKGSKDCVQTMLP 102


>SB_2010| Best HMM Match : Ribosomal_L32p (HMM E-Value=7.5e-06)
          Length = 140

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 244 STPSRRQFSHSRDWLWNRASERGCSFC 324
           +TPS+++  H   WL NR     C+ C
Sbjct: 67  TTPSKKKLRHQHKWLKNRTDIEVCAVC 93


>SB_46038| Best HMM Match : TRI5 (HMM E-Value=3.5)
          Length = 541

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 436 CFVYPYEPTPKESEPFKSVVPDNK 507
           CF+Y Y P PKE+  F    PD K
Sbjct: 503 CFIYGY-PIPKEALAFSDPTPDGK 525


>SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)
          Length = 355

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = +1

Query: 511 SVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIR-KSKRT 687
           S+    AP  L+T+NN TC+ R+  +       PI + +L  H  K+    L   + K T
Sbjct: 19  SITTEDAPTSLATANNNTCNCRQK-NACPRKLPPI-ICYLPSHCNKKGQQHLRNLRKKAT 76

Query: 688 LTITVYN-SRISCEYVKTVANVINKN 762
            T+  YN +  +  Y  + A V + N
Sbjct: 77  ATMWHYNIAAFAIIYYTSCATVWHYN 102


>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1571

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 439 FVY-PYEPTPKESEPFKSVVPDNKHSVIHSIAPFF 540
           FV+ P +P P   +P    +PDN  +VI     +F
Sbjct: 68  FVFRPDQPNPDGGDPIPGEIPDNYKTVIEKFDQYF 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,610,511
Number of Sequences: 59808
Number of extensions: 443385
Number of successful extensions: 1349
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)