Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0392
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-16|AAK29984.1|  375|Caenorhabditis elegans Hypothetical...    29   2.8  
Z68882-17|CAI79150.1|  111|Caenorhabditis elegans Hypothetical p...    29   4.8  
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U40028-9|AAA81120.1|  256|Caenorhabditis elegans Serpentine rece...    29   4.8  
Z75714-11|CAB00063.2|  723|Caenorhabditis elegans Hypothetical p...    28   8.5  
Z75714-10|CAN99711.1|  721|Caenorhabditis elegans Hypothetical p...    28   8.5  
AL031633-9|CAA21023.1|  636|Caenorhabditis elegans Hypothetical ...    28   8.5  
AF024500-4|AAB70365.1|  335|Caenorhabditis elegans Hypothetical ...    28   8.5  

>AC024859-16|AAK29984.1|  375|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.20a protein.
          Length = 375

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 451 YEPTPKES-EPFKSVVPDNKHSVIHSIAPFFLSTSNNLT 564
           YE   KES +   SV+P+N H  +  + P+F  +  N T
Sbjct: 93  YEKLCKESPDLLASVLPENVHDALVELVPYFTESFGNAT 131


>Z68882-17|CAI79150.1|  111|Caenorhabditis elegans Hypothetical
           protein C47E12.14 protein.
          Length = 111

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 673 KSKRTLTITVYNSRISCEYVKTVANVINKNKNI 771
           KSK TL   ++ +R+S ++VKT  NV +K +++
Sbjct: 58  KSKFTLAQPIFKNRMSADFVKTHKNVGSKIEHL 90


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 643 IKRNYNALIRKSKRTLTITVYNSRISCEYVKTVANVINKN 762
           I RN         + +T  V NS + C + +TV N++N +
Sbjct: 21  IPRNLTCGHALCHKCITAMVNNSTVECPFCRTVTNIVNND 60


>U40028-9|AAA81120.1|  256|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 39 protein.
          Length = 256

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 521 WITECLLSGTTDLNGSDSLGVG 456
           W   CL SGTT + GS +LG G
Sbjct: 54  WNGNCLSSGTTSMMGSRALGYG 75


>Z75714-11|CAB00063.2|  723|Caenorhabditis elegans Hypothetical
           protein ZC434.6b protein.
          Length = 723

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 583 WSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNS 711
           W++    YS  Y   L ++ I+R+  + ++ SK    I +YNS
Sbjct: 74  WNSFYPKYSGKYWALLPVNLIRRDTISQLKSSKCLSGIVLYNS 116


>Z75714-10|CAN99711.1|  721|Caenorhabditis elegans Hypothetical
           protein ZC434.6a protein.
          Length = 721

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 583 WSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNS 711
           W++    YS  Y   L ++ I+R+  + ++ SK    I +YNS
Sbjct: 74  WNSFYPKYSGKYWALLPVNLIRRDTISQLKSSKCLSGIVLYNS 116


>AL031633-9|CAA21023.1|  636|Caenorhabditis elegans Hypothetical
           protein Y39A1A.12 protein.
          Length = 636

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -1

Query: 328 IYRNYNLALKLGSTTNPSNERIAYGMVL----TSTLNSSVG 218
           IY+NY +     S   P+ +  AYGM+L    TS +N S G
Sbjct: 561 IYKNYCIICSEVSGIGPATDSFAYGMLLQLASTSLINLSKG 601


>AF024500-4|AAB70365.1|  335|Caenorhabditis elegans Hypothetical
           protein K06H6.6 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 585 VYHEGELFPYLFNIPHYTPDK 647
           VY  G L PY + +PH+TP K
Sbjct: 302 VYRNGGLNPYDYYLPHWTPLK 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,137,097
Number of Sequences: 27780
Number of extensions: 338378
Number of successful extensions: 1091
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)