Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0392
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    31   0.64 
At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransfera...    30   1.9  
At3g16940.1 68416.m02165 calmodulin-binding protein similar to a...    28   5.9  
At5g42310.1 68418.m05149 pentatricopeptide (PPR) repeat-containi...    28   7.9  

>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -1

Query: 469 P*VSVHTDRRNTMEYCYKLWVGNGQDIVKKYFPLSF 362
           P + V T   N  EY  KL + +G D   KYFPL+F
Sbjct: 384 PLIVVDTKNLNC-EYQLKLMIASGVDAANKYFPLAF 418


>At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransferase,
            putative similar to Swiss-Prot:P05055 polyribonucleotide
            nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide
            phosphorylase) (PNPase) [Escherichia coli]
          Length = 991

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
 Frame = +1

Query: 460  TPKESEPFKSVVPDN----------KHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYS 609
            T KE E  +S+ P+           +   + S++P   ST++NL   S+   STMKEN S
Sbjct: 848  TQKEEEALESIAPEETSAECGEILKQDGKLKSVSPKNNSTASNLVSFSKAKKSTMKENLS 907


>At3g16940.1 68416.m02165 calmodulin-binding protein similar to
           anther ethylene-upregulated protein ER1 GI:11612392 from
           [Nicotiana tabacum]; contains Pfam profile: PF00612 IQ
           calmodulin-binding motif (3 copies)
          Length = 852

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -3

Query: 590 VDQDLLEEHVRLFEVLRKNGAIEWITECLLSGTTDLNGSDSLGVG 456
           V  D  ++H  LFE+  KN   EW+ E +L G   L+  DS G+G
Sbjct: 471 VSFDQAKDH--LFELSLKNRLKEWLMEKVLEGRNTLD-YDSKGLG 512


>At5g42310.1 68418.m05149 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 709

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
 Frame = +1

Query: 475 EPFKSVVPDNKHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKEN--YSPIYLTFLTIHQIK 648
           E +++V     HS+I S+     STS+     +  SW   K N  +S   L  + IH + 
Sbjct: 123 ESYRAVPAPYWHSLIKSLTS---STSSLGLAYAVVSW-LQKHNLCFSYELLYSILIHALG 178

Query: 649 RN---YNALIRKSKRTLTITVYNSRI-SCEYVKTVANVIN 756
           R+   Y A +   K+TLT   YN+ I +C     +   +N
Sbjct: 179 RSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDIEKALN 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,986,565
Number of Sequences: 28952
Number of extensions: 304326
Number of successful extensions: 899
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)