Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0391
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0721 + 20401217-20401360,20401689-20401809,20401969-204020... 33 0.38
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.2
03_05_0183 - 21681673-21682524 31 1.5
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 4.7
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 29 4.7
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 4.7
01_06_0456 + 29521282-29522064 29 4.7
06_03_0836 - 25249491-25249511,25249883-25250050,25250721-252509... 29 6.2
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 6.2
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 6.2
07_03_0626 + 20060013-20060273,20061017-20061274 28 8.2
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 8.2
02_01_0298 + 1998278-1998655,1998836-1999111,1999203-1999271,199... 28 8.2
01_06_1563 + 38271816-38272145 28 8.2
>08_02_0721 +
20401217-20401360,20401689-20401809,20401969-20402067,
20402790-20402851,20403680-20403797,20404004-20404343,
20404435-20404582,20405043-20405144,20405240-20405359,
20405812-20405895,20405974-20406101,20408314-20408389,
20408556-20408631,20408800-20408876,20408975-20409031,
20409411-20409555,20409634-20409806,20409928-20410054,
20410090-20410192,20410492-20410688,20410946-20411097
Length = 882
Score = 32.7 bits (71), Expect = 0.38
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -3
Query: 579 SAECMNQMSETAVPLVLSSITIATQAISRVKLTCLTTV*SQLTFPFDG*TIQRLANFVRN 400
SA C+N + +VL + A + + T ++ SQL+F +++R+ ++
Sbjct: 732 SASCINIIDPVEQAVVLCQVEKAKEGMLNQLYTSIS---SQLSFVVSMRSVERIEELIQE 788
Query: 399 DRKSRHRR--IKKQ 364
D +HRR IKKQ
Sbjct: 789 DHSVKHRREKIKKQ 802
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 640 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSHLDRGD 780
A+ A +GK + E E S+QCD T + +S RE +R + G+
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSREKKRNPYAAAGE 476
>03_05_0183 - 21681673-21682524
Length = 283
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1
Query: 343 SQAFIATLLFDPSMSALPIIANKIRQALDCSPIKRERELGLDRRETG 483
SQAF A LL D + +A+P++ + R A + + + E E RR TG
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPAPE-TETETEEEPPRQRRRTG 274
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 553 GHLVHALGRAAGGAN*P-SAGLCLNASKAEASLA 651
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +1
Query: 16 RTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKP 195
R + +R E G +RR L D +RG+ + A H AG + RG KP
Sbjct: 59 RCIAEGRREEEEEVGRSRRGKDLDLDDMRGYGET-----ATHHGLRLAGREEVSPRGGKP 113
Query: 196 RVEQKGK 216
RV+ G+
Sbjct: 114 RVDNGGR 120
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 282 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 389
YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>01_06_0456 + 29521282-29522064
Length = 260
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Frame = -1
Query: 116 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRP 12
AW+C P +G+RG +RRR P S R R +T+RP
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRP 52
>06_03_0836 -
25249491-25249511,25249883-25250050,25250721-25250920,
25251000-25251324,25251981-25252045,25252231-25252552,
25252650-25252730
Length = 393
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +2
Query: 431 VHPSKGNVSWD*TVVRQVSFTLLMACVAIVILLSTRGTAVSDIWFMHS 574
V P K +VS +V Q SFT M +I LLS RGT S I + +
Sbjct: 303 VEPHKKHVS----IVSQNSFTKEMTAYSIHSLLSVRGTFCSQIGLLEA 346
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 49 TTLHAWNETPCARRYY 2
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 57 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 146
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 652 RLGWLRP*RRSGIIPRMVSSHHRP 581
RLGWLRP R S ++P S P
Sbjct: 32 RLGWLRPSRLSAVVPASESGRVGP 55
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 136 PPQSNSPPGSVLEPDHAGVLNGDE 65
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>02_01_0298 +
1998278-1998655,1998836-1999111,1999203-1999271,
1999881-2000073,2000161-2000555
Length = 436
Score = 28.3 bits (60), Expect = 8.2
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = +1
Query: 634 AEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSHLDRGDRCYRFFS*HVH 813
A A A +GK R+ GSK+ + H KR TR + D G YR S H
Sbjct: 35 AVACRAAAGKGTSKARARDKDGSKRQQRRALEEHLKRRTRSGAAFDAG--LYRRHS-HAE 91
Query: 814 H 816
H
Sbjct: 92 H 92
>01_06_1563 + 38271816-38272145
Length = 109
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -2
Query: 265 PCFRVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPP 113
P RV ++ + Q ++ PRE+++ + + + R+ ++ PQ NSPP
Sbjct: 60 PKCRVKLKDSYSIQENYMGSKPREMAISSSASTTNPRHKGQEI-PQKNSPP 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,966,230
Number of Sequences: 37544
Number of extensions: 567287
Number of successful extensions: 1577
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1577
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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