Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0391
         (851 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024847-1|AAK29961.1|  193|Caenorhabditis elegans Hypothetical ...    29   5.5  
Z49966-5|CAA90245.1|  445|Caenorhabditis elegans Hypothetical pr...    28   9.7  

>AC024847-1|AAK29961.1|  193|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.8 protein.
          Length = 193

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 170 GQLSEDRNLAWSKRAKAGLIQMFSTHRDSKARPIDPLV*RVF--SKRCQKSYHRDNWL 337
           G LS  R L  +   + G I   +TH  SK    D L  +VF   KRC++    D WL
Sbjct: 122 GALSLARCLVSTLTQRLGEIVSTATHLQSKGEKFDSLETKVFLEGKRCKEDI--DTWL 177


>Z49966-5|CAA90245.1|  445|Caenorhabditis elegans Hypothetical
           protein F35C11.5 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 628 RRSGIIPRMVSSHHRPLGRVHEPNVRNCGS-SRTEQYYYRNT 506
           RR  + P + S   +P G +  P + +CGS   T  Y Y+ T
Sbjct: 164 RRRSVAPFLGSGGSQPTGMLISPELWHCGSEGSTRNYTYQAT 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,115,231
Number of Sequences: 27780
Number of extensions: 437587
Number of successful extensions: 1108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)