Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0391
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   2.0  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    23   4.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   6.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   8.2  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -2

Query: 214 CPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAG 83
           C  +P   S+ + L+   +  +  +   Q NSP  +   P H+G
Sbjct: 30  CTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSG 73


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -2

Query: 574 RVHEPNVRNCGSSRTEQYYYRNTSHQ*GKTNLSHDGLIPAHVPF*WVNNP 425
           R  EP + +  S+      Y N +++    N++H   IP  VP  + N P
Sbjct: 75  RSKEPKIISSLSNNYNYSNYNNNNYKQLCYNINHIEQIPVPVPVYYGNFP 124


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 234 CSVRIGTRKHGLSIL*YKEFLARGARKVTTGITGL 338
           CS  IG   H L     KEF  R   +++ GI  +
Sbjct: 168 CSTPIGNLSHALLKDPVKEFWERRTLQISDGIENI 202


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 234 CSVRIGTRKHGLSIL*YKEFLARGARKVTTGITGL 338
           CS  IG   H L     KEF  R   +++ GI  +
Sbjct: 221 CSTPIGNLSHALLKDPVKEFWERRTLQISDGIENI 255


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 568 ALGRAAGGAN*PSAGLCLNASKAEASL 648
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 568 ALGRAAGGAN*PSAGLCLNASKAEASL 648
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 568 ALGRAAGGAN*PSAGLCLNASKAEASL 648
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 568 ALGRAAGGAN*PSAGLCLNASKAEASL 648
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 594 RTTGRSAECMNQMSETAVPLVLSS 523
           +  G+  +C N MSE  V ++L +
Sbjct: 170 KENGKEFDCHNYMSELTVDILLET 193


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 331 LACGSQAFIATLLFDPSMSALPIIANKIRQALDCSPIKRER 453
           + CG Q F A   F    +AL    N+I +  + S    +R
Sbjct: 719 IVCGIQRFAAGFCFTVVYAALLTKTNRISRIFNASKHSAKR 759


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,713
Number of Sequences: 438
Number of extensions: 5314
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)