Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0388
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.8  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    25   9.6  
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    25   9.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.6  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   9.6  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    25   9.6  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    25   9.6  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 716 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 582
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 792 KRSSPFKTPADPVR 751
           K S+PFK P DP++
Sbjct: 104 KNSAPFKVPVDPIK 117


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 208 LASALEAFRHNPADGSSHHRPLGRVHEPNVR 300
           LA   +A R+NP+ G+ H R   R+ +  VR
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 17/64 (26%), Positives = 24/64 (37%)
 Frame = +1

Query: 163 SRGSTVSISLPDSARLASALEAFRHNPADGSSHHRPLGRVHEPNVRNCGSSRTEQYYYRN 342
           S  STVS S   S+   ++  +    PA  SSH   L      +     S+     +Y N
Sbjct: 367 SFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHN 426

Query: 343 DKPS 354
              S
Sbjct: 427 STSS 430


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 599  SPYAY*TSGSSQLLPFCSTRGF 664
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 208 LASALEAFRHNPADGSSHHRPLGRVHEPNVR 300
           LA   +A R+NP+ G+ H R   R+ +  VR
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +3

Query: 576 GSIGRAFAVPMRTEHLD-QASFCPFAPREVSVLAELALGHLR-YSLTDV-PPQSNFPPGS 746
           GS G  F+   RT  LD +        + V++L   ++ + + Y+L  + PP +  PP S
Sbjct: 129 GSAGPLFSSTARTSRLDSRLPDGGIIAKPVALLPTPSVANSQEYTLDKLSPPSTAKPPAS 188

Query: 747 VLEPDP 764
           V+E +P
Sbjct: 189 VIEFNP 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,743
Number of Sequences: 5004
Number of extensions: 69169
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)