Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0388
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.4  
07_03_0846 - 21983581-21986055                                         29   3.3  
06_01_0655 + 4742267-4742531,4743313-4744136                           29   3.3  

>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -1

Query: 212 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 78
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 70  DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 219
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>06_01_0655 + 4742267-4742531,4743313-4744136
          Length = 362

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
 Frame = +1

Query: 70  DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 246
           ++RDP  G+R  +  F       +++  E    RG    ++ PD A +AS     + + A
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVAS-----QRSHA 183

Query: 247 DGSSHHRPLGRVHE-PNVRNCGSS---RTEQYYY 336
           + SS + P   + E P V + G+     T  Y Y
Sbjct: 184 EPSSMNMPAFSIEEKPAVMSAGNKTMYNTNAYAY 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,227,640
Number of Sequences: 37544
Number of extensions: 522543
Number of successful extensions: 1526
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)