Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0388
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14730-2|AAB37562.2|  187|Caenorhabditis elegans C.elegans homeo...    29   5.2  
AY647457-1|AAT67384.1|  187|Caenorhabditis elegans homeobox gene...    29   5.2  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   9.0  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    28   9.0  
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    28   9.0  

>L14730-2|AAB37562.2|  187|Caenorhabditis elegans C.elegans homeobox
           protein 16 protein.
          Length = 187

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
 Frame = -1

Query: 272 SGRWCELPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD------FTSRVSHSK 111
           S R+ + PSAG     S+   S   SG       PR +    Q D        SR    K
Sbjct: 56  STRYSDRPSAGPRHRKSRKRESTGSSGSSEEEKRPRTAFTGDQLDRLKTEFRESRYLTEK 115

Query: 110 RETRRRSPFGSRRSMLSVFFLTRASRLRRS 21
           R        G   S + ++F  + ++L++S
Sbjct: 116 RRQELAHELGLNESQIKIWFQNKRAKLKKS 145


>AY647457-1|AAT67384.1|  187|Caenorhabditis elegans homeobox gene 16
           protein.
          Length = 187

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
 Frame = -1

Query: 272 SGRWCELPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD------FTSRVSHSK 111
           S R+ + PSAG     S+   S   SG       PR +    Q D        SR    K
Sbjct: 56  STRYSDRPSAGPRHRKSRKRESTGSSGSSEEEKRPRTAFTGDQLDRLKTEFRESRYLTEK 115

Query: 110 RETRRRSPFGSRRSMLSVFFLTRASRLRRS 21
           R        G   S + ++F  + ++L++S
Sbjct: 116 RRQELAHELGLNESQIKIWFQNKRAKLKKS 145


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 795 RKRSSPFKTPADPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKPRVEQKGKS 634
           R+R SP K+P  P R    +GS + +    ++ A   R  Q  Q+ R  ++ +S
Sbjct: 452 RRRRSPSKSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPRRRRS 505


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 666 VLAELALGHLRYSLTDVPPQSNFPPGSVLEPDPREF*TATNVSATSP 806
           V++E   G LRY   ++P   +FPP S   P P      TN S+  P
Sbjct: 4   VVSEDPAGRLRYQYHNLPVAQSFPPPS--HPPPPS--ATTNPSSNKP 46


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
            protein Y43D4A.5 protein.
          Length = 1648

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 154  PPDSRGSTVSISLPDSARLASALEAFRHNPAD-GSSHHRPLGRVHEPNVRNCGSSR 318
            PP S  S V+ + P   +    +E+  H PAD GS    PLG    P  R  G+ +
Sbjct: 868  PPGSASSMVAHTAPGPLKSHRNVES-GHAPADFGSGSVEPLGSPPGPQTRPIGTGQ 922


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,717,776
Number of Sequences: 27780
Number of extensions: 403454
Number of successful extensions: 1123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)