Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0388
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.6  
At3g60590.3 68416.m06778 expressed protein                             28   8.4  
At3g60590.2 68416.m06779 expressed protein                             28   8.4  
At3g60590.1 68416.m06780 expressed protein                             28   8.4  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    28   8.4  

>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 677 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 564
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At3g60590.3 68416.m06778 expressed protein 
          Length = 404

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -2

Query: 520 WLVAPSVHSDVAF*SFDVGSSYHCEAKFAKRWIVHPSKGNVSW 392
           WLV P V+          G +   E   A  W+VH  +G VSW
Sbjct: 329 WLVTPVVYEAYRILQLMRGLTLSAEVN-APVWVVHMLRGLVSW 370


>At3g60590.2 68416.m06779 expressed protein 
          Length = 329

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -2

Query: 520 WLVAPSVHSDVAF*SFDVGSSYHCEAKFAKRWIVHPSKGNVSW 392
           WLV P V+          G +   E   A  W+VH  +G VSW
Sbjct: 254 WLVTPVVYEAYRILQLMRGLTLSAEVN-APVWVVHMLRGLVSW 295


>At3g60590.1 68416.m06780 expressed protein 
          Length = 236

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -2

Query: 520 WLVAPSVHSDVAF*SFDVGSSYHCEAKFAKRWIVHPSKGNVSW 392
           WLV P V+          G +   E   A  W+VH  +G VSW
Sbjct: 161 WLVTPVVYEAYRILQLMRGLTLSAEVN-APVWVVHMLRGLVSW 202


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 269 GRWCELPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD 138
           G W +L         +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,947,243
Number of Sequences: 28952
Number of extensions: 389236
Number of successful extensions: 1094
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)