Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0384
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0456 + 29521282-29522064                                         30   1.9  
03_04_0006 + 16257288-16259522                                         30   2.5  
06_03_0854 + 25400855-25403741,25406174-25407708                       29   4.4  
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399     29   4.4  
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    29   4.4  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    29   5.8  
04_03_0094 - 11113279-11114469                                         28   7.6  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    28   7.6  

>01_06_0456 + 29521282-29522064
          Length = 260

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
 Frame = -3

Query: 627 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILS 511
           AW+C  P +G+RG  +RRR  P    S R  R    +T+RP + S
Sbjct: 12  AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTS 56


>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -2

Query: 439 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 287
           A+RSP    Y T L +   ARL    T    PA SP    +AV S   + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 439 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 314
           AKR+PT  T    P  AR  +++   +F   +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515


>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
          Length = 146

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +2

Query: 527 RTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKP 706
           R +   +R E    G +RR   L  D +RG+ +      A H     AG    + RG KP
Sbjct: 59  RCIAEGRREEEEEVGRSRRGKDLDLDDMRGYGET-----ATHHGLRLAGREEVSPRGGKP 113

Query: 707 RVEQKGK 727
           RV+  G+
Sbjct: 114 RVDNGGR 120


>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 257 IDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 156
           +DDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 568 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 657
           +KR  P K PA S S+ LPG + + G  SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368


>04_03_0094 - 11113279-11114469
          Length = 396

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 241 NASSSISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKT 366
           NA+ + + +  W N    VP+  L  P+  ER W N  G+KT
Sbjct: 29  NATVTSALSRRWRNVHAAVPVVDLVDPKKGER-WGNVSGQKT 69


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 647 PPQSNSPPGSVLEPDHAGVLNGDE 576
           P  +NS P +V +PD   +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,601,326
Number of Sequences: 37544
Number of extensions: 530477
Number of successful extensions: 1698
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1694
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)