Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0384
         (809 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51800.1 68418.m06423 expressed protein                             31   1.2  
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   3.7  
At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo...    29   3.7  
At5g05440.1 68418.m00586 expressed protein low similarity to cyt...    29   4.8  
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    29   4.8  
At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family p...    29   4.8  
At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family p...    29   4.8  
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   4.8  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   4.8  
At3g62370.1 68416.m07006 expressed protein                             28   8.4  

>At5g51800.1 68418.m06423 expressed protein
          Length = 972

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 220 MTLLR*PNASSSISDA-HEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSLTLVW 390
           M +LR P++SS I +  H+W N I  V  + L + +  ++  E      +LL+  ++W
Sbjct: 613 MAILRKPDSSSCIENVQHQWPNVIGYVKGFGLWRGEEADKVREGAADPSSLLAEKILW 670


>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 418 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 308
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase familiy protein
           similar to SP|O14072 Cation-transporting ATPase 4 (EC
           3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
           accession IPR001757: ATPase, E1-E2 type; contains Pfam
           profile PF00702: haloacid dehalogenase-like hydrolase
          Length = 1179

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -1

Query: 785 IDRPCFRSPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTD 651
           +D  CF    +   +DQA  C   P + S   E+   H R  +TD
Sbjct: 73  VDFKCFVQFSKVNSIDQADACKVTPAKFSGSKEVVPLHFRSQMTD 117


>At5g05440.1 68418.m00586 expressed protein low similarity to
           cytokinin-specific binding protein [Vigna radiata]
           GI:4190976
          Length = 203

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -1

Query: 593 VLNGDER---FRHVTTLHAWNETPCXXXXXXXAPLPPNRVSNETMKVV 459
           V+ GD R   +R VTTLHA ++            +PP     ET+  V
Sbjct: 138 VVGGDHRLKNYRSVTTLHASDDEGTVVVESYIVDVPPGNTEEETLSFV 185


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 221 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 111
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 33  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69


>At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 256 LMTRHLATLRES*LLPPFTRACLNFFTLTFRALGRNH 146
           L+  HLAT+  + L  P  +A  N F   FRA+ RN+
Sbjct: 170 LLIAHLATILHASLRTPNLKARFNTFREEFRAVWRNY 206


>At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 256 LMTRHLATLRES*LLPPFTRACLNFFTLTFRALGRNH 146
           L+  HLAT+  + L  P  +A  N F   FRA+ RN+
Sbjct: 170 LLIAHLATILHASLRTPNLKARFNTFREEFRAVWRNY 206


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 221 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 111
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 32  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 650 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 534
           +P  SNS P +VL   + A  + GD     H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 635 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 540
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,174,507
Number of Sequences: 28952
Number of extensions: 389588
Number of successful extensions: 1105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)