Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0382
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0006 - 13632902-13633026,13634013-13634179,13634286-136344...    28   3.4  
12_02_0661 + 21644328-21644517,21644697-21644875,21644899-216459...    27   7.9  

>09_04_0006 -
           13632902-13633026,13634013-13634179,13634286-13634437,
           13634564-13634672,13635096-13635280,13635372-13635687,
           13635796-13635903,13635994-13636139,13636223-13636237
          Length = 440

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 144 VR*VLHDIKFFFLVCHLSVNGNFG 73
           +R VLH+  F F+ CHL+  G  G
Sbjct: 200 IRFVLHETSFCFVCCHLASGGKQG 223


>12_02_0661 +
           21644328-21644517,21644697-21644875,21644899-21645922,
           21647108-21647262
          Length = 515

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
 Frame = -2

Query: 317 LILH*KIYCLIKMVSTHCYC**LLNFH*NSNLKYLCDIQFHK-INTITGFIYVYCFMLVL 141
           LI H +++  I  V   CY     +   +  L+ + +I   K +N+I   +  Y F L+ 
Sbjct: 369 LITHDEVFTKILPVEILCYIILDKHVEIHDMLEKVSEIASLKSLNSI--HVCKYTFNLIG 426

Query: 140 GKYYMT*NFFFLCAISL*MEILEPLKIPLLFNH 42
           G  Y   N F++CAI +  + L  L++ L+ NH
Sbjct: 427 G--YAE-NKFYMCAICITCDKLADLRLKLVNNH 456


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,761,054
Number of Sequences: 37544
Number of extensions: 185898
Number of successful extensions: 255
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)