Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0382
(483 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical... 32 0.19
AC006830-1|AAK68610.3| 802|Caenorhabditis elegans Hypothetical ... 32 0.25
Z81553-12|CAB04498.3| 803|Caenorhabditis elegans Hypothetical p... 31 0.44
Z81553-7|CAB04496.4| 797|Caenorhabditis elegans Hypothetical pr... 31 0.44
Z81492-9|CAB04026.2| 805|Caenorhabditis elegans Hypothetical pr... 31 0.44
U80025-2|AAD32270.3| 806|Caenorhabditis elegans Hypothetical pr... 31 0.44
AF022985-6|AAB69963.1| 457|Caenorhabditis elegans Hypothetical ... 31 0.44
AC006769-9|AAF60585.2| 779|Caenorhabditis elegans Hypothetical ... 31 0.44
AC006645-2|AAF39844.2| 796|Caenorhabditis elegans Hypothetical ... 31 0.44
U55363-2|AAA97961.3| 357|Caenorhabditis elegans Serpentine rece... 27 9.4
>AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical
protein F46F5.11 protein.
Length = 796
Score = 32.3 bits (70), Expect = 0.19
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 333 SXNKYSDFTLKNLLPHKNGFHTLLLLVTIEF 241
S YS + +N L HK+ FHTL L T+ F
Sbjct: 255 SVGSYSPWNSQNTLFHKSAFHTLFLPTTVSF 285
>AC006830-1|AAK68610.3| 802|Caenorhabditis elegans Hypothetical
protein ZK105.3 protein.
Length = 802
Score = 31.9 bits (69), Expect = 0.25
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 333 SXNKYSDFTLKNLLPHKNGFHTLLLLVTIEF 241
S YS + +N L HK+ FHTL L T+ F
Sbjct: 258 SVGTYSPWNSQNTLFHKSAFHTLFLPTTVSF 288
>Z81553-12|CAB04498.3| 803|Caenorhabditis elegans Hypothetical
protein F56H6.9 protein.
Length = 803
Score = 31.1 bits (67), Expect = 0.44
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 333 SXNKYSDFTLKNLLPHKNGFHTLLLLVTIEF 241
S YS + +N L HK+ FHT+ L T+ F
Sbjct: 266 SVGTYSPWNSQNTLFHKSAFHTMFLPTTVSF 296
>Z81553-7|CAB04496.4| 797|Caenorhabditis elegans Hypothetical
protein F56H6.7 protein.
Length = 797
Score = 31.1 bits (67), Expect = 0.44
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 333 SXNKYSDFTLKNLLPHKNGFHTLLLLVTIEF 241
S YS + +N L HK+ FHT+ L T+ F
Sbjct: 266 SVGTYSPWNSQNTLFHKSAFHTMFLPTTVSF 296
>Z81492-9|CAB04026.2| 805|Caenorhabditis elegans Hypothetical
protein E03H4.4 protein.
Length = 805
Score = 31.1 bits (67), Expect = 0.44
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 333 SXNKYSDFTLKNLLPHKNGFHTLLLLVTIEF 241
S YS + +N L HK+ FHT+ L T+ F
Sbjct: 270 SVGTYSPWNSQNTLFHKSAFHTMFLPTTVSF 300
>U80025-2|AAD32270.3| 806|Caenorhabditis elegans Hypothetical
protein F02C9.2 protein.
Length = 806
Score = 31.1 bits (67), Expect = 0.44
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 333 SXNKYSDFTLKNLLPHKNGFHTLLLLVTIEF 241
S YS + +N + HK+ FHTL L T+ F
Sbjct: 269 SVGTYSPWNSQNTMFHKSAFHTLFLPTTVSF 299
>AF022985-6|AAB69963.1| 457|Caenorhabditis elegans Hypothetical
protein T15B7.7 protein.
Length = 457
Score = 31.1 bits (67), Expect = 0.44
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 333 SXNKYSDFTLKNLLPHKNGFHTLLLLVTIEF 241
S YS + +N + HK+ FHTL L T+ F
Sbjct: 38 SVGTYSPWNSQNTMFHKSAFHTLFLPTTVSF 68
>AC006769-9|AAF60585.2| 779|Caenorhabditis elegans Hypothetical
protein Y45G12C.11 protein.
Length = 779
Score = 31.1 bits (67), Expect = 0.44
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 333 SXNKYSDFTLKNLLPHKNGFHTLLLLVTIEF 241
S YS + +N + HK+ FHTL L T+ F
Sbjct: 246 SVGTYSPWNSQNTMFHKSAFHTLFLPTTVSF 276
>AC006645-2|AAF39844.2| 796|Caenorhabditis elegans Hypothetical
protein F56A4.6 protein.
Length = 796
Score = 31.1 bits (67), Expect = 0.44
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 333 SXNKYSDFTLKNLLPHKNGFHTLLLLVTIEF 241
S YS + +N + HK+ FHTL L T+ F
Sbjct: 263 SVGTYSPWNSQNTMFHKSAFHTLFLPTTVSF 293
>U55363-2|AAA97961.3| 357|Caenorhabditis elegans Serpentine
receptor, class h protein28 protein.
Length = 357
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 155 FMLVLGKYYMT*NFFFLCAISL*MEILEPLKIPLL-FNHLNNVK 27
+++ G Y+ F LC+ISL + I+ + IP++ F LN +K
Sbjct: 198 YVVASGSYFRFSLFLKLCSISLFLYIIACIFIPVVAFQILNRMK 241
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,849,652
Number of Sequences: 27780
Number of extensions: 220541
Number of successful extensions: 415
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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