Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0380
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0019 + 403078-404211                                             31   1.2  
12_01_0861 + 8153108-8153266,8154633-8155136                           30   1.5  
03_06_0307 + 33027012-33027167,33028505-33028615,33028927-330290...    28   6.2  
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130...    28   8.1  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   8.1  

>09_01_0019 + 403078-404211
          Length = 377

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +3

Query: 366 GESGFDSGEGA*ETATTSKEGSRRANYPLPARGGSDEK*RYG 491
           G S  DSG GA ++A   K  SRR  +      GSD   R+G
Sbjct: 321 GASDGDSGSGASDSADDRKRSSRRRRHRKSESSGSDGDERHG 362


>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -3

Query: 514 PIRGLVRVPYRYFSSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVV 341
           P   L   P    SS  P    G   RL  S  +VA+ + P P S+P  D P   TT+ +
Sbjct: 86  PSSQLRAAPRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVAL 145

Query: 340 AE 335
            E
Sbjct: 146 IE 147


>03_06_0307 +
           33027012-33027167,33028505-33028615,33028927-33029065,
           33029215-33029323,33029422-33029425
          Length = 172

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +2

Query: 212 RRRASRPKSLILMNRITFADRMVKYRRRIFQM 307
           R+RA+  K++ L N+I   +R+++ RR+I +M
Sbjct: 28  RKRAAAAKTVSLKNQIRSTERLLRKRRKIERM 59


>03_01_0161 +
           1307206-1307769,1307979-1308101,1308182-1308286,
           1308688-1308867,1308988-1309050,1309151-1309345,
           1309704-1309805,1309885-1309947,1310045-1310113,
           1310215-1310270,1310587-1310755
          Length = 562

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -3

Query: 475 SSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLK- 299
           SS PP   S   +RL  +      S AP P  +  +P P +  V ++  I S  G +L  
Sbjct: 6   SSKPPTPASTPSSRLAAAPSSRVSSAAPHPSPSSSAPTPASRTVYSDRFIPSRAGSNLAL 65

Query: 298 -DASPVLDH 275
            D +P   H
Sbjct: 66  FDLAPSPSH 74


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 619 RNNFSIRYWSWNYRGC 572
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,068,862
Number of Sequences: 37544
Number of extensions: 408168
Number of successful extensions: 1074
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)