Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0379
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0177 + 15140414-15140777,15142067-15142239                       31   1.0  
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331...    28   7.2  
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377...    27   9.5  

>03_03_0177 + 15140414-15140777,15142067-15142239
          Length = 178

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +3

Query: 204 LDGSISLSPLYPVPTIDCTSESLRSSIRVSPDFDLTRHSSPSFGSQHLCSE 356
           +DG+ + SP  P P +DCT+E+L+  +    D+     ++PS  S+  C E
Sbjct: 24  VDGATASSPA-PAPAVDCTAEALK--LADCLDYVTPGKTAPSRPSKLCCGE 71


>01_06_1087 -
           34430521-34430899,34432336-34432806,34432926-34433112,
           34433470-34433599,34433794-34434125,34434566-34435050,
           34435185-34435752,34436579-34436640,34437569-34437636
          Length = 893

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 75  KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGSISLSPLY 236
           K E  LRSF       + LP     K+ I A++  GN+ GRN    GS  L  L+
Sbjct: 93  KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGSPFLFGLH 147


>11_01_0489 +
           3776563-3776692,3776995-3777073,3777532-3777840,
           3778828-3778898,3778975-3779213,3779306-3779383,
           3779734-3780156,3780416-3780661,3780886-3780978,
           3781480-3781527
          Length = 571

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 250 IVGTGYRGERLIEPSSSWFRPKFPSG 173
           + GTG      + PSS+WF P+  SG
Sbjct: 14  VFGTGPLPPASLSPSSAWFDPELSSG 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,219,129
Number of Sequences: 37544
Number of extensions: 354722
Number of successful extensions: 723
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)