Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0379
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4) 35 0.049
SB_47253| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_40022| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_28768| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_17596| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_15711| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_13940| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_3184| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_57385| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_54119| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_52963| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_50350| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_31920| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_28366| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8) 35 0.049
SB_25308| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_24745| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_2618| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_34064| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_34332| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_28521| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26) 29 3.2
SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_36629| Best HMM Match : Fer2 (HMM E-Value=0.0041) 29 4.2
SB_21326| Best HMM Match : Myosin_head (HMM E-Value=5e-05) 28 7.4
SB_23657| Best HMM Match : Sushi (HMM E-Value=0) 28 7.4
SB_57745| Best HMM Match : Extensin_2 (HMM E-Value=0.69) 27 9.7
SB_6863| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28) 27 9.7
>SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/29 (68%), Positives = 21/29 (72%)
Frame = +1
Query: 265 NRYGPPSGFPLTST*PGIVHHLSGPSICA 351
NRY PP FPL S GIVHHLSGP+ CA
Sbjct: 1 NRYEPPPEFPLASPYSGIVHHLSGPNRCA 29
>SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = +3
Query: 264 ESLRSSIRVSPDFDLTRHSSPSFGSQHLCS 353
ESLR+S RVS F L RHSSPSFGSQ + S
Sbjct: 35 ESLRASTRVSSGFTLFRHSSPSFGSQQMRS 64
>SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4)
Length = 402
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 261 TRTHVRLLGPCFKTG 275
>SB_47253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 31 TRTHVRLLGPCFKTG 45
>SB_40022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 31 TRTHVRLLGPCFKTG 45
>SB_28768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 31 TRTHVRLLGPCFKTG 45
>SB_17596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 31 TRTHVRLLGPCFKTG 45
>SB_15711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 31 TRTHVRLLGPCFKTG 45
>SB_13940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 31 TRTHVRLLGPCFKTG 45
>SB_3184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 31 TRTHVRLLGPCFKTG 45
>SB_57385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 31 TRTHVRLLGPCFKTG 45
>SB_54119| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 31 TRTHVRLLGPCFKTG 45
>SB_52963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 31 TRTHVRLLGPCFKTG 45
>SB_50350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 31 TRTHVRLLGPCFKTG 45
>SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 155 TRTHVRLLGPCFKTG 169
>SB_31920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 31 TRTHVRLLGPCFKTG 45
>SB_28366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 31 TRTHVRLLGPCFKTG 45
>SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8)
Length = 411
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 274 TRTHVRLLGPCFKTG 288
>SB_25308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 31 TRTHVRLLGPCFKTG 45
>SB_24745| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 31 TRTHVRLLGPCFKTG 45
>SB_2618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 513 TRTHARLLGPCYKTG 557
TRTH RLLGPC+KTG
Sbjct: 31 TRTHVRLLGPCFKTG 45
>SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +1
Query: 265 NRYGPPSGFPLTST*PGIVHH 327
NRY PP FPL S GIVHH
Sbjct: 1 NRYEPPPEFPLASPYSGIVHH 21
>SB_34064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 32.7 bits (71), Expect = 0.26
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 513 TRTHARLLGPCYKT 554
TRTH RLLGPC+KT
Sbjct: 355 TRTHVRLLGPCFKT 368
>SB_34332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -2
Query: 557 TRLVTRTKESSMCAS 513
TRL TRTKES+MCAS
Sbjct: 35 TRLETRTKESNMCAS 49
>SB_28521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -3
Query: 568 ALAGPVL*HGPRSLACVRV 512
A + P L HGPRSL CVRV
Sbjct: 61 ASSDPCLKHGPRSLTCVRV 79
>SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)
Length = 308
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 345 NAGTRKMVNYAWSGRSQGKP*WRTVAILTCNRSSE 241
NA RK + + W P WRTV ++ N + E
Sbjct: 75 NAARRKEIRFTWGTDFLPSPRWRTVFLIGANDNQE 109
>SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 345 NAGTRKMVNYAWSGRSQGKP*WRTVAILTCNRSSE 241
NA RK + + W P WRTV ++ N + E
Sbjct: 79 NAARRKEIRFTWGTDFLPTPRWRTVFLIGANDNQE 113
>SB_36629| Best HMM Match : Fer2 (HMM E-Value=0.0041)
Length = 128
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = -3
Query: 397 LPRRLVSNQ*MKARSEHKC----WDPKDGELCLVRSKSGETLMEDRSDSDV 257
L RR VSN + +++H+ + +DG+ V++K G++L++ D+DV
Sbjct: 29 LARRYVSNGKEQTKAKHETVSITFVDRDGDRQTVKAKVGDSLLDVAKDNDV 79
>SB_21326| Best HMM Match : Myosin_head (HMM E-Value=5e-05)
Length = 469
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 614 GLVRVCLNVCDDTVSGTRRTRLVTRTKE 531
GL ++C+N+C +T+ TR+ T+E
Sbjct: 121 GLNQICVNLCAETIQHFYNTRIFKTTEE 148
>SB_23657| Best HMM Match : Sushi (HMM E-Value=0)
Length = 331
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = -3
Query: 364 KARSEHKCWDPKDGELCLVRSKSGETLMEDRSDSDVQSIVGTGYRGERLIEPSSSWFRPK 185
K + + +CW PK V SKSG+ + +Q GT G + + P
Sbjct: 210 KPKCKRRCWVPKPPLRGQVLSKSGKDYAKHGEHLRIQCNSGTDAVGPSQSQCKDGRWSPN 269
Query: 184 FP 179
FP
Sbjct: 270 FP 271
>SB_57745| Best HMM Match : Extensin_2 (HMM E-Value=0.69)
Length = 472
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 216 ISLSPLYPVPTIDCTS--ESLRSSIRVSPDFDLTRHSSPSFGSQHLCSERAFIH 371
I L P+ PVPT CT + L S + +P+ ++ + P + H ++H
Sbjct: 68 IPLYPVPPVPTFHCTQCPQYLHSIVPSTPNTYISLYPVPQVPTFHCTQYPQYLH 121
>SB_6863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = -1
Query: 564 SQDPSCNTDQGV*HVCESLVL*IFNIKLKGVTKVKA 457
S DP NT+QGV H ESL + +GV KVKA
Sbjct: 43 SSDPPWNTEQGVLHGGESL----SDRNSEGVMKVKA 74
>SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28)
Length = 307
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 319 VHHLSGPSICAQSAPSFTDWKRDASGVRKSR 411
V L+ S+C Q APSF + K+ AS VR ++
Sbjct: 183 VRKLAKISLCDQYAPSFKEKKKMASEVRVAK 213
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,630,598
Number of Sequences: 59808
Number of extensions: 404794
Number of successful extensions: 956
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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