Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0377
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366... 33 0.23
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469... 32 0.40
06_02_0022 - 10686901-10687506,10687730-10688680 29 4.9
06_01_0605 + 4373697-4373872,4374840-4374876,4375296-4375399,437... 28 6.5
03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718... 28 6.5
07_03_0583 - 19684388-19684498,19685083-19685216,19685765-196858... 28 8.6
06_01_1126 - 9277885-9277935,9278129-9278209,9278297-9278350,927... 28 8.6
01_03_0206 - 13783169-13783651,13783761-13783903,13783962-137841... 28 8.6
>08_01_0410 +
3661304-3661383,3661494-3661673,3661757-3661870,
3661975-3662133,3662193-3662243,3662838-3663018,
3663102-3663228,3663322-3663431,3663529-3663667,
3663767-3663876,3664002-3664071,3664247-3664320,
3664458-3664553,3664682-3664777,3665041-3665168,
3665422-3665656,3665743-3665910,3666274-3666381,
3666468-3666617,3666905-3667015,3667118-3667297,
3667427-3667555,3667819-3667914,3668108-3668293,
3668431-3668603,3668720-3668921
Length = 1150
Score = 33.1 bits (72), Expect = 0.23
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 280 RCPWSPGAKLIGVLHAVHLVVSYQFV 203
RC WSP ++GV + H+V +Y FV
Sbjct: 430 RCLWSPDGSILGVAFSKHIVQTYAFV 455
>09_04_0202 -
15544498-15545037,15546043-15546449,15546874-15546977,
15547580-15547788,15548092-15549428,15551680-15551941
Length = 952
Score = 32.3 bits (70), Expect = 0.40
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 448 WKLIALWENNKVYFKILNTELTNTWYWESALTGTATIWPSEST 576
WK I W + LN + T Y +S L IWP +ST
Sbjct: 403 WKDIGFWNEGNGILRQLNLGKSTTKYADSVLDLNPVIWPGKST 445
>06_02_0022 - 10686901-10687506,10687730-10688680
Length = 518
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 370 LSNDVQGDDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILNTELTN 516
LS+DV YG G T+ + W ++ L +N +V K+ ELTN
Sbjct: 307 LSHDVMRVLLSDLYGAGASTTAALIEWGMVDLIQNPEVMTKV-REELTN 354
>06_01_0605 +
4373697-4373872,4374840-4374876,4375296-4375399,
4375942-4376137,4376385-4376451,4376895-4376998,
4377090-4377174,4377309-4377369,4377694-4377825,
4377924-4377993,4379261-4379413,4379583-4379694,
4379779-4379920,4380023-4380140,4380862-4380957,
4381061-4381189
Length = 593
Score = 28.3 bits (60), Expect = 6.5
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 179 SEVITNVVNKLIRNN--KMNCMEYAYQLGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTS 349
SE I+++ N+L R+ K+ C + S A I S+L S LS+ TRL CTS
Sbjct: 343 SEFISHLANQLARHQFLKIACQLERKNIAS-AYSLLRVIESELQSYLSAVNTRLGHCTS 400
>03_02_0295 +
7178921-7179451,7180083-7180448,7181316-7181450,
7181533-7181606,7181960-7181999,7182178-7182223,
7182398-7182477,7182585-7182760,7182848-7182973,
7183338-7183430,7184135-7184260,7184815-7184884,
7185262-7185344,7186216-7186329,7186884-7186983,
7187557-7187583
Length = 728
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +1
Query: 376 NDVQGDDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILNTELTNTWY 525
N V DDG Y D KD ++ K + K Y + N +L WY
Sbjct: 322 NVVDQDDGSDIYFD-KDAEDHEINIKAAICFLRGKAYEALDNCDLARQWY 370
>07_03_0583 -
19684388-19684498,19685083-19685216,19685765-19685888,
19685982-19686251,19686961-19687155,19687236-19687328,
19687411-19687539,19687646-19689277
Length = 895
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 184 SHHKCREQTDTKQQDELHGVRLSTWLQGSKDIVRDCFPVEFR 309
+HHK R QQD L G+ TW Q + + DC + R
Sbjct: 415 NHHKRRNGEQESQQDSLVGI---TWSQETGTLSFDCEKIASR 453
>06_01_1126 - 9277885-9277935,9278129-9278209,9278297-9278350,
9278433-9278564,9278641-9278715,9279056-9279133,
9279215-9279327,9279421-9279535,9280565-9280754,
9281355-9281464,9281559-9281654,9281756-9281818,
9281911-9281988,9282452-9282564,9282664-9282721,
9282797-9282920,9282999-9283060,9283131-9283195,
9283264-9283324,9284242-9284307,9284472-9284531,
9284830-9284960,9285517-9285592,9285701-9285769,
9286065-9286112,9286552-9286671,9286918-9287034,
9287290-9287405,9288348-9288519,9289057-9289100,
9290359-9290712,9291680-9291806
Length = 1072
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 131 YDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLGSRAPRTS 280
YD + K+ L E K S+ +TN+ KL ++++ EY Q + + RT+
Sbjct: 1017 YDDDLAKADSLNEVKLSDFLTNIFVKLWESDRL-LFEYLCQALTDSQRTA 1065
>01_03_0206 -
13783169-13783651,13783761-13783903,13783962-13784128,
13784641-13785149,13786031-13786312,13786397-13786792,
13787232-13787504
Length = 750
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 445 SWKLIALWENNKVYFKILNTELTNTWYWESALTGTATIWPSESTASIV 588
SW IA + V + N + N W+W + GTAT + + +V
Sbjct: 516 SWSYIA--NASSVGYAPGNFSMQNNWFWFEKVVGTATPEKDQQDSKVV 561
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,307,490
Number of Sequences: 37544
Number of extensions: 321706
Number of successful extensions: 959
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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