Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0377
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45893| Best HMM Match : Arc (HMM E-Value=3.3)                       29   5.0  
SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_57561| Best HMM Match : fn3 (HMM E-Value=0)                         28   8.8  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_45893| Best HMM Match : Arc (HMM E-Value=3.3)
          Length = 186

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 172 EEERSHHKCREQTDTKQQDELHGVRLSTWLQGSKDIVRDC 291
           +EERS    R   D  ++  +H VRL + L G      DC
Sbjct: 115 DEERSQSSVRHGPDLTEELAVHAVRLGSRLPGRSSNAVDC 154


>SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 734

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/80 (25%), Positives = 32/80 (40%)
 Frame = +2

Query: 71  SDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAY 250
           SDVP  +     Y +  + D DSA + S       KS +  N V +        C   + 
Sbjct: 42  SDVPEPVAASTPYQTRELRDMDSANDGSSLKKHTDKSNMAHNAVERFSTETTSVCRSVSE 101

Query: 251 QLGSRAPRTSSGIVSQLSSD 310
           +  S+ P +S  +  +  SD
Sbjct: 102 ESQSQEPISSVLVHDESFSD 121


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
 Frame = +2

Query: 107  YNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKL--IRNNKMNCMEYAYQLGSRAPRTS 280
            ++SV    +DS+V   + L+E KK     +++  L  +   + N    + +  SR P  S
Sbjct: 910  FHSVGGTSWDSSVADEEDLFEVKKKPDKPSLLAALKPVARQESNASLKSNKSASRIPVRS 969

Query: 281  SGIVSQLSSDLSS---PKTRLSLCTS 349
              + S +S D  S   P +R+ + +S
Sbjct: 970  DSVKSSVSVDFKSKEPPASRIPVLSS 995


>SB_57561| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1614

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 379  DVQGDDGRPAYGDGKDKTSPRVSWKLIALWENNKVYF-KILNTELTNTWYWESALTGTAT 555
            DV        YG+G   TS  ++W+ + + + N +     +N  L +T    S L    T
Sbjct: 859  DVPDSPPLSLYGEGPTPTSLSLTWQPVPIPQRNGIILGYTVNIRLNDTSLDNSTLLWNTT 918

Query: 556  IWPSESTASI 585
            + P  +  S+
Sbjct: 919  VLPDAAILSL 928


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 66  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 197
           +IPTS     R SFTI    P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,673,749
Number of Sequences: 59808
Number of extensions: 366228
Number of successful extensions: 1252
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)