Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0377
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   1.4  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    28   5.8  
Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    28   7.7  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    28   7.7  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 128 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 238
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 128 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 238
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 169 GEEERSHHKCREQTDTKQQDELHGVRLSTW 258
           G E R + + R Q D ++QD++   R S W
Sbjct: 846 GREHRDYDRDRSQIDRRRQDDMGARRRSRW 875


>Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical
           protein C03C10.4 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/84 (23%), Positives = 41/84 (48%)
 Frame = +2

Query: 86  DILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLGSR 265
           D+L+ ++     + +  SA++KS+  YE K  EV+T  +N  +    M+ +E+  Q    
Sbjct: 152 DLLQLEMALRKCLEENGSAIKKSRPYYERK--EVLTRTMNSQL--ELMSILEHEVQERKD 207

Query: 266 APRTSSGIVSQLSSDLSSPKTRLS 337
           +   S   + Q+S  +   ++  S
Sbjct: 208 SYSDSMRALEQISDQIHQERSSQS 231


>Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical
           protein C38C10.3 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 266 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 361
           A + SSG+VSQ+SS  SS + R +L   ++ S
Sbjct: 91  AVKNSSGLVSQISSTTSSERKRRTLARPSSSS 122


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +2

Query: 8    PKMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 175
            P +K  +V LC+   +LY + S     + + EQLY  +SV  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 176  KSEVITNVVNKLIRNNKMNCMEYAY 250
            + E   N++N  +      C+E AY
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAY 1004


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +2

Query: 8    PKMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 175
            P +K  +V LC+   +LY + S     + + EQLY  +SV  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 176  KSEVITNVVNKLIRNNKMNCMEYAY 250
            + E   N++N  +      C+E AY
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAY 1004


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,308,333
Number of Sequences: 27780
Number of extensions: 268337
Number of successful extensions: 906
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)