Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0376
         (652 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ780943-1|ABH07113.1|  910|Drosophila melanogaster prominin pro...    29   5.5  
BT029279-1|ABK30916.1| 1066|Drosophila melanogaster IP13255p pro...    29   5.5  
AE013599-3867|AAM68313.1|  670|Drosophila melanogaster CG30164-P...    29   5.5  
X14396-1|CAA32569.1|  281|Drosophila melanogaster sodium channel...    28   9.6  
AE013599-3978|AAM70798.1| 1618|Drosophila melanogaster CG9071-PA...    28   9.6  
AE013599-3977|AAF47291.4| 2327|Drosophila melanogaster CG9071-PB...    28   9.6  

>DQ780943-1|ABH07113.1|  910|Drosophila melanogaster prominin
           protein.
          Length = 910

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 43  FNLIVFILFYLSTGLTVFYTFRLIIYVIINDFNLIIIYNLYDEDYIMLNRI 195
           F + V ++   S  LT+F  F L +     +  + +  +LYDEDY ML ++
Sbjct: 498 FFIAVMLICLASICLTIFGVFSLAVG---GNAEVFVCRSLYDEDYNMLGKL 545


>BT029279-1|ABK30916.1| 1066|Drosophila melanogaster IP13255p
           protein.
          Length = 1066

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 43  FNLIVFILFYLSTGLTVFYTFRLIIYVIINDFNLIIIYNLYDEDYIMLNRI 195
           F + V ++   S  LT+F  F L +     +  + +  +LYDEDY ML ++
Sbjct: 499 FFIAVMLICLASICLTIFGVFSLAVG---GNAEVFVCRSLYDEDYNMLGKL 546


>AE013599-3867|AAM68313.1|  670|Drosophila melanogaster CG30164-PA
           protein.
          Length = 670

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 43  FNLIVFILFYLSTGLTVFYTFRLIIYVIINDFNLIIIYNLYDEDYIMLNRI 195
           F + V ++   S  LT+F  F L +     +  + +  +LYDEDY ML ++
Sbjct: 479 FFIAVMLICLASICLTIFGVFSLAVG---GNAEVFVCRSLYDEDYNMLGKL 526


>X14396-1|CAA32569.1|  281|Drosophila melanogaster sodium channel
           protein protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 46  NLIVFILFYLSTGLTVFYTFRLIIYVIINDFNLI 147
           NL  +I F +      F+T  L I VII++FN++
Sbjct: 246 NLYAYIYFVIFIVCGSFFTLNLFIGVIIDNFNML 279


>AE013599-3978|AAM70798.1| 1618|Drosophila melanogaster CG9071-PA,
            isoform A protein.
          Length = 1618

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 46   NLIVFILFYLSTGLTVFYTFRLIIYVIINDFNLI 147
            NL  +I F +      F+T  L I VII++FN++
Sbjct: 1130 NLYAYIYFVIFIVCGSFFTLNLFIGVIIDNFNML 1163


>AE013599-3977|AAF47291.4| 2327|Drosophila melanogaster CG9071-PB,
            isoform B protein.
          Length = 2327

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 46   NLIVFILFYLSTGLTVFYTFRLIIYVIINDFNLI 147
            NL  +I F +      F+T  L I VII++FN++
Sbjct: 1839 NLYAYIYFVIFIVCGSFFTLNLFIGVIIDNFNML 1872


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,331,339
Number of Sequences: 53049
Number of extensions: 144972
Number of successful extensions: 327
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)