Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0376
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83231-1|CAB05749.1|  357|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine re...    29   2.2  
Z79601-5|CAB01882.1|  450|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical p...    27   8.7  
AC024831-2|AAN63422.1|  502|Caenorhabditis elegans Hypothetical ...    27   8.7  
AC024831-1|AAN63421.1|  500|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z83231-1|CAB05749.1|  357|Caenorhabditis elegans Hypothetical
           protein F57G9.1 protein.
          Length = 357

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 261 YIIYLPFNLKLMVIYVSILGSILGFMVRNMGIYSLNKLLLRYNLRSFL 404
           Y    P NLKL++    +L  IL   + N+ IY ++K+ L +    FL
Sbjct: 17  YFYNEPLNLKLVISIFELLSYILCGYILNLSIYVMSKIQLFHKNLMFL 64


>AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein100 protein.
          Length = 361

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 49  LIVFILFYLSTGLTVFYTFRLII 117
           L+  ILF+LS  L+VFY FR ++
Sbjct: 147 LMAVILFFLSALLSVFYQFRFVV 169


>Z79601-5|CAB01882.1|  450|Caenorhabditis elegans Hypothetical
           protein K09A9.3 protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 19  LEMVSFNSFNLIVFILFYLSTGLTVFYTFRLIIYVIINDFN 141
           L +V+      ++FI    ST LT F+T  +I  +++N  N
Sbjct: 126 LSIVAVCVITTMIFIYVETSTWLTGFFTLTIITIIVLNGAN 166


>Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical
           protein C01G10.3 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 49  LIVFILFYLSTGLTVFYTFRLIIYVIINDFNL-IIIYNLYDEDYIMLNRIF 198
           L+V I  Y+   L  F  +   +  II  F + +++YN +   Y+ +NR F
Sbjct: 71  LVVMIGVYVPESLIGFSIYPRSVESIIIIFGMNLLVYNEFQSVYLSINRFF 121


>AC024831-2|AAN63422.1|  502|Caenorhabditis elegans Hypothetical
           protein Y55F3C.7b protein.
          Length = 502

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 22  EMVSFNSFNLIVFILFYLSTGLTVFYTFRLIIYVII 129
           E VS N FNL+ ++  +L+    V +T  +++ +++
Sbjct: 327 ECVSVNEFNLLYYLCIFLAVCSIVGFTMNIVLALML 362


>AC024831-1|AAN63421.1|  500|Caenorhabditis elegans Hypothetical
           protein Y55F3C.7a protein.
          Length = 500

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 22  EMVSFNSFNLIVFILFYLSTGLTVFYTFRLIIYVII 129
           E VS N FNL+ ++  +L+    V +T  +++ +++
Sbjct: 327 ECVSVNEFNLLYYLCIFLAVCSIVGFTMNIVLALML 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,395,232
Number of Sequences: 27780
Number of extensions: 91098
Number of successful extensions: 324
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)