Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0374
         (781 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    39   0.16 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    38   0.37 
UniRef50_Q0SHW7 Cluster: Putative uncharacterized protein; n=1; ...    34   4.6  
UniRef50_Q7NGA4 Cluster: Gll3269 protein; n=4; Bacteria|Rep: Gll...    33   8.0  
UniRef50_A7B1N8 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 38.7 bits (86), Expect = 0.16
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -2

Query: 621 RWVDELTAHLVLSGYRNP 568
           RWVDELTAHLVLSGY +P
Sbjct: 158 RWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 37.5 bits (83), Expect = 0.37
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = -3

Query: 446 AGWWCLPARTYKRSYHLY 393
           A WW LPART+KRSYH Y
Sbjct: 569 AEWWYLPARTHKRSYHRY 586


>UniRef50_Q0SHW7 Cluster: Putative uncharacterized protein; n=1;
           Rhodococcus sp. RHA1|Rep: Putative uncharacterized
           protein - Rhodococcus sp. (strain RHA1)
          Length = 243

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -3

Query: 503 TTAAPP---FNSKRITSSRRK*AGWWCLPART 417
           TT  PP   + S R  S+RR  AGWWC  ART
Sbjct: 3   TTPCPPPRSWVSSRPASARRAAAGWWCRSART 34


>UniRef50_Q7NGA4 Cluster: Gll3269 protein; n=4; Bacteria|Rep:
           Gll3269 protein - Gloeobacter violaceus
          Length = 651

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +2

Query: 329 KINKPNIVSSLDTYIQVYRYIYTGGRTSCKSARVGTTTLPISAV 460
           KI     V   +T+ Q+ RYIYT G T+ +S +V  T LP S++
Sbjct: 137 KIGSTQYVYIAETH-QINRYIYTNGDTTAQSRQVIVTNLPDSSL 179


>UniRef50_A7B1N8 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus gnavus ATCC 29149|Rep: Putative
           uncharacterized protein - Ruminococcus gnavus ATCC 29149
          Length = 668

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -1

Query: 454 GNRQGGGAYPRGLTRGPTTCIYISVYLYICIKG*YNIWFIYLCN*RLVLFGIANKSLM 281
           GN  G G YP+  +  P  C + ++  +      YN++ I+LC   LVLFG+    LM
Sbjct: 39  GNFAGNGTYPQAASLHPLVCFHTALTDFP-----YNLYGIFLC---LVLFGLLTFLLM 88


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 693,267,651
Number of Sequences: 1657284
Number of extensions: 13828838
Number of successful extensions: 30745
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30242
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)