Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0374
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55774-2|AAA98009.3|  380|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>U55774-2|AAA98009.3|  380|Caenorhabditis elegans Hypothetical
           protein F35G8.1 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 437 WCLPARTYKRSYHLYIYICIPVYMYQGMIQYLVYLSL 327
           W  P   Y+R +H   Y+C  V + QG+    V L+L
Sbjct: 79  WATPLAYYQRVWHFGKYMCYMVSIIQGLSLMWVPLTL 115


>Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical
           protein ZK829.10 protein.
          Length = 669

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -2

Query: 456 AEIGRVVVPTRADLQEVLPPVYIYLYTCIYVSRDDTIFGLFIFVIKGLFYLVL 298
           A I + +  T AD+  +    Y +   CI+VS      GLF+    G  YL +
Sbjct: 383 ALIMKTITVTIADIFNIKMKTYFFDCLCIFVSMVIATSGLFLCFESGPLYLTM 435


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,928,079
Number of Sequences: 27780
Number of extensions: 328898
Number of successful extensions: 654
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)