Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0373
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    31   0.13 
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    29   0.53 
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      29   0.92 
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    28   1.2  
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    27   2.1  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    27   2.1  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    27   3.7  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    26   4.9  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    26   6.5  
SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual       26   6.5  
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    26   6.5  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   8.6  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    25   8.6  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
 Frame = -3

Query: 715 EKAEILSPNSEEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNFKVEV-ENLIS 539
           EK+ ++S  +      +K+ +KL+VS  + + L +K  GLAQ +    N K+++ E   S
Sbjct: 197 EKSALVSDLASLQSDHSKVCEKLEVSSRQVQDLEKKLAGLAQQN-TELNEKIQLFEQKRS 255

Query: 538 NFKENINLCK 509
           N+  + N+ K
Sbjct: 256 NYSSDGNISK 265


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -2

Query: 431 NKIEKDFVSSKQEELSTCEKNTDNKHYLLGKENDMETEIDIAN 303
           N ++ +F  S   +L T E NT NK  ++  END++T + I+N
Sbjct: 136 NMLKLNFYHSLGFDLETAE-NTGNKRVIIHTENDLQT-VQISN 176


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 589 HSAVSDNFKVEVENLISNFKENINL 515
           H + SDNFKV + N   N KE+ NL
Sbjct: 166 HDSESDNFKVVLSNCAINSKEDNNL 190


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = -3

Query: 727 EENYEKAEILSPNSEEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNFKVEVEN 548
           +E  +  E+LS +S+E     +++ KL+    +     EKTI   + S     FK EVE 
Sbjct: 546 QELQDTKEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENEESI--SLFKEEVEK 603

Query: 547 LISNFKENINLCK*PCHTI-*IQQKLSLLK 461
           L     +        CH    +Q++L  L+
Sbjct: 604 LTDEITQLSERYNDKCHEFDELQKRLQTLE 633


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 700 LSPNSEEMKTEAKL-LQKLKVSCNKSKLLAEKTIGLAQHSAVSDNFKVEVENLISNFKE 527
           + P +E  K +A+L  QKLK+   + +LL +    L  ++   D F   +EN   +FKE
Sbjct: 42  MKPYAELEKRKAELHAQKLKLVQKRQQLLRDNYNVLVDYARNQDAFYQLLENSRHDFKE 100


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -2

Query: 497 YNLDTAEVEFIKSTCIRENLFFNKIEKDFVSSKQEELST 381
           +++D   +E+I S C++   FF+   ++ +SS +   +T
Sbjct: 148 FHIDDVPLEWISSICMQVQSFFSPAAREAISSLKSRTTT 186


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/67 (20%), Positives = 29/67 (43%)
 Frame = -2

Query: 494 NLDTAEVEFIKSTCIRENLFFNKIEKDFVSSKQEELSTCEKNTDNKHYLLGKENDMETEI 315
           +LD A ++ +        L+     K     K+++     K    K+ ++   N+ME E+
Sbjct: 6   DLDGASMDELAGKSYEALLYLMNKNKKRKPEKKDDKEKSSKKVQKKNKVIESLNEMEVEM 65

Query: 314 DIANSND 294
           +  N N+
Sbjct: 66  EDENENE 72


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 727 EENYEKAEILSPNSEEMKTEAKLLQKLKVSCNKSKLL 617
           E   +K+E+L+ N+E+MK    L +  K+S +  K L
Sbjct: 35  ELRIKKSEVLAANAEDMKAAKLLAESGKLSSSMVKRL 71


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 362 YLYFFHKYLTLPVCL 406
           + YFFHKY T P+ L
Sbjct: 287 FSYFFHKYFTFPLRL 301


>SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 718 YEKAEILSPNSEEMKTEAKLLQKLKVSCNKSKLLAE 611
           Y   E +SP  EE+K    LL+KL+    +  L AE
Sbjct: 25  YSFLEFVSPKIEELKYRKLLLEKLQTHIREVVLDAE 60


>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 298 FEFAISISVSMSFSFPKR*CLL 363
           F+ A+ +++  SFSF K+ C++
Sbjct: 181 FQLAVGLTIKKSFSFSKKSCVI 202


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 256 YRVGSFALSTVITTPSADRFLFFFQSLKNLLTGTFNTR 143
           Y+V        +  P  ++F  FF SLK L T   N R
Sbjct: 294 YKVSLIQEGVKVDFPEGNKFQHFFHSLKVLFTVPSNRR 331


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 733 SREENYEKAEILSPNSEEMKTEAKLL 656
           S  E   +AEI+ PNS  +KT+  LL
Sbjct: 254 SAYEKLAEAEIIFPNSRYLKTQRALL 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,186
Number of Sequences: 5004
Number of extensions: 53112
Number of successful extensions: 160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)