Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0373
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 33 0.32
07_03_0250 - 15822602-15822650,15822744-15822814,15822908-158230... 31 0.97
08_02_1530 + 27670400-27671008 31 1.3
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 30 1.7
04_01_0100 + 1034057-1034308,1034962-1035078,1035152-1035382,103... 29 2.9
06_03_1510 + 30665857-30666038,30666137-30666236,30666358-306664... 29 5.2
03_02_0591 - 9682476-9682487,9682805-9682885,9683085-9683192,968... 29 5.2
07_03_1526 + 27456426-27456700,27457936-27458023,27458129-274587... 28 9.0
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78... 28 9.0
>03_01_0049 +
418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 32.7 bits (71), Expect = 0.32
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = -3
Query: 727 EENYEKAEILSPNSEEMKTEAKLLQKLKVSCN-KSKLLAEKTIGLAQHSAVSDNFKVEVE 551
EE ++A++ +S ++K + ++L+K C+ KSK E L+ A D+++ E+E
Sbjct: 312 EELRDEAKMWERHSRKLKADLEMLKK---ECSEKSKQQTELEAELSAAHAERDSYRQEIE 368
Query: 550 NLISNFKE 527
L S+ KE
Sbjct: 369 ELKSSMKE 376
>07_03_0250 -
15822602-15822650,15822744-15822814,15822908-15823006,
15823235-15823309,15823808-15823885,15823990-15824098,
15824167-15824216,15824310-15824411,15824994-15825071,
15825419-15825685,15825863-15825962,15826137-15826315
Length = 418
Score = 31.1 bits (67), Expect = 0.97
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -2
Query: 446 ENLFFNKIEKDFVSSKQEELSTCEKNT-DNKHYLLGKENDMETEID 312
EN+ NK+ + +S K +EL C T + H LL K+N++ I+
Sbjct: 352 ENIQQNKVNEQ-ISEKIQELENCSAQTQETLHALLQKQNELANHIE 396
>08_02_1530 + 27670400-27671008
Length = 202
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -3
Query: 706 EILSPNSEEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNFKVEVENLIS 539
+I+ PNS +K QK +++C + +LLA + S V F+ ++N +S
Sbjct: 140 QIVMPNSSRWSLVSKAFQKARIACQEEQLLALELDISDIESRVETLFRRLIQNRVS 195
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = -3
Query: 727 EENYEKAEILSPNSEEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNFKVEVEN 548
E E AE + E++ E++ KL S + KLL E+ A SA + E N
Sbjct: 474 EARVEVAEKKGSDLEQLLGESE--NKLVASSGELKLLEERVQQEAASSAEKEKLLEEATN 531
Query: 547 LISNFKENIN 518
+ +KE IN
Sbjct: 532 SVEAYKEKIN 541
>04_01_0100 +
1034057-1034308,1034962-1035078,1035152-1035382,
1038200-1038455,1038551-1038807,1038978-1039250,
1039617-1039898,1040045-1040165,1040351-1040520,
1040613-1040711
Length = 685
Score = 29.5 bits (63), Expect = 2.9
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -3
Query: 715 EKAEILSPNSEEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNFKVEVENLISN 536
EK EI + N + K K K + + KLL K + ++ A +D+ KV +NL N
Sbjct: 165 EKHEINALNKDIQKLLWKNKYKFPKASAQIKLLGLKEVIKSKPDAANDDKKVNHDNLDGN 224
Query: 535 FKENIN-LCK*P 503
EN LC P
Sbjct: 225 DDENKEPLCNPP 236
>06_03_1510 +
30665857-30666038,30666137-30666236,30666358-30666438,
30666514-30666618,30666722-30666916,30667440-30667501,
30667870-30667885,30668007-30668068,30668933-30668951
Length = 273
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 559 EVENLISNFKENINLCK*PCHTI*IQQKLSLLKVHVL 449
E++NL+S + N++LCK I Q LSLL +L
Sbjct: 130 ELDNLLSFIQTNLDLCKWAALAIVATQALSLLLATIL 166
>03_02_0591 -
9682476-9682487,9682805-9682885,9683085-9683192,
9683307-9683383,9683495-9683603,9683696-9683794,
9684208-9684294,9684454-9684514,9684646-9684720,
9684826-9684854
Length = 245
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 274 FNSFKFYRVGSFALSTVITTPSADRFLFFFQSLKN 170
FN F+ +G F+L + P +RF FF +KN
Sbjct: 167 FNDGPFF-LGQFSLVDIAYVPFIERFQIFFSGIKN 200
>07_03_1526 +
27456426-27456700,27457936-27458023,27458129-27458725,
27458731-27460056,27460283-27460729
Length = 910
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = -3
Query: 319 RLILQT--QMMKYSSC*FNSFKFYRVGSFALSTVITTPS-ADRFLFF 188
R+IL+ MM+ +SC N F +R+ A+S V TPS A++++FF
Sbjct: 829 RVILEQCIYMMECNSCYANCFNEFRMMD-AVSMVEETPSRAEKYMFF 874
>03_01_0099 +
778521-778736,779521-779775,779831-779924,780064-780116,
780301-780339,781091-781159,781275-781445,781533-781598,
782533-782601,782993-783060,783308-783430,784095-784228,
784412-784506,784600-784644,784755-784814,785548-785599,
785674-785714,785857-785921,786704-786755,787021-787092
Length = 612
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 434 FNKIEKDFVSSKQEELSTCEKNTDNKHYLLGKEN 333
F+ +E+D +SS + S KNT NK L+ +N
Sbjct: 194 FSSLEQDIISSTLGKNSNYHKNTGNKVLLMTLQN 227
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,296,107
Number of Sequences: 37544
Number of extensions: 260956
Number of successful extensions: 595
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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