Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0373
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.75 
SB_46458| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_46779| Best HMM Match : PP2C_C (HMM E-Value=1.7)                    29   4.0  
SB_20138| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_31228| Best HMM Match : EMP24_GP25L (HMM E-Value=0.22)              29   5.3  
SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)                     28   7.0  
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)                     28   9.2  

>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 221 DYGR*RKTTNPIKLKRIKSTT*IFHHLSLQYQSQFPCHFLFPKDNVCYL 367
           DYG  ++++N I L R+   T + H ++L        H  FP   +CY+
Sbjct: 712 DYGSPKRSSNDIALLRLSRPTILTHRINLACMPNDTVH--FPNGTMCYI 758


>SB_46458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 431 NKIEKDFVSSKQEELSTCEKNTDNKHYLLGKENDMETEI 315
           N+ E+++   K E L+        +HY+LGKEN M   +
Sbjct: 239 NQTERNYAQIKNECLAIMYATERFEHYILGKENRMRLRL 277


>SB_46779| Best HMM Match : PP2C_C (HMM E-Value=1.7)
          Length = 405

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -3

Query: 688 SEEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNFKVEVENLISNFKE 527
           SE  K   K  QK+K    K+K   EK IG      +SDN ++   +  S FKE
Sbjct: 48  SEATKEVDKSKQKMKSEITKAKKQLEKKIGKRTEVIISDN-ELRSHSFGSFFKE 100


>SB_20138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 860

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = -2

Query: 497 YNLDTAEVEFIKSTCIRENLFFNKIEKDFVSSKQEELSTCEKNTDNKHYLLGKENDMETE 318
           Y L+  + E +K          NK E ++ ++++E L+  +     + YLLGKE D+ T+
Sbjct: 359 YYLEQTDREGVKRPVAFGGRKLNKAECNYSTTEKECLAVIQALKAYRPYLLGKEFDLYTD 418


>SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 467 IKSTCIRENLFFNKIEKDFVSSKQEELSTCEK 372
           ++  C+RE+  F  + ++F    +E +STC +
Sbjct: 25  VREHCVREHQLFANVVREFREQFREHMSTCSR 56


>SB_31228| Best HMM Match : EMP24_GP25L (HMM E-Value=0.22)
          Length = 350

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -3

Query: 172 NLLTGTFNTREAVQNFSLLGSCIPDFLKKALKYYHRARRDALMPWI 35
           N+  G        Q +   G  +  + K  LKYYHR     L PW+
Sbjct: 28  NISNGALGNEADSQPYKY-GFSLQQYYKYCLKYYHRECSPELKPWM 72


>SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)
          Length = 1199

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 467 IKSTCIRENLFFNKIEKDFVSSKQEELSTCEK 372
           ++  C+RE+  F  + ++F    +E +STC +
Sbjct: 292 VRKHCVREHQLFANVVREFREQFREHVSTCSR 323


>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
          Length = 2478

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
 Frame = -3

Query: 727  EENYEKAEILSPNSEEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNFKV-EVE 551
            E + EK ++L  N+E  K EA          N +    + TI   QH+ V    K+ ++E
Sbjct: 694  EFSEEKYKMLQSNAEGFKKEANAASDKAHKLNLANAKMQLTIDGLQHNLVEAKEKLGKIE 753

Query: 550  NLISNFKENINLCK*PCHTI*IQQKLSLLKVHVLERTYFLIKLKKI 413
                  +   ++ +    T+ +Q+  +LL+ H  +++  L+ L+ +
Sbjct: 754  ETCETLQAEKDMLR-NSETMLMQENKTLLQQH-KDQSSLLVNLQSL 797


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,739,502
Number of Sequences: 59808
Number of extensions: 338621
Number of successful extensions: 984
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)