Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0373
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical pr...    33   0.28 
AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein...    33   0.28 
AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical ...    30   1.5  
U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical ...    29   2.6  
AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical...    29   2.6  
Z98866-18|CAB11555.2|  387|Caenorhabditis elegans Hypothetical p...    28   6.1  
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical...    28   8.0  

>Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical
           protein C44H4.3 protein.
          Length = 680

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -2

Query: 494 NLDTAEVEFIKSTCIRENLFFNKIEKDFVSSKQEELSTCE----KNTDNKHYLLGKENDM 327
           NL    +++ K   IR+N F N      +S     +S  +    +NT N HYL   EN++
Sbjct: 206 NLIALHIKYNKINAIRQNDFVNLTSLSMLSLNGNNISEIKGGALQNTPNLHYLYLNENNL 265

Query: 326 ET 321
           +T
Sbjct: 266 QT 267


>AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein
           protein.
          Length = 680

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -2

Query: 494 NLDTAEVEFIKSTCIRENLFFNKIEKDFVSSKQEELSTCE----KNTDNKHYLLGKENDM 327
           NL    +++ K   IR+N F N      +S     +S  +    +NT N HYL   EN++
Sbjct: 206 NLIALHIKYNKINAIRQNDFVNLTSLSMLSLNGNNISEIKGGALQNTPNLHYLYLNENNL 265

Query: 326 ET 321
           +T
Sbjct: 266 QT 267


>AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical
           protein Y39A3A.1 protein.
          Length = 311

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 264 LSFIGLVVLRYLP*SPHLAPTDFYFF 187
           L  +G+ VL + P SP LAPTD++ F
Sbjct: 228 LQTLGIEVLPHPPYSPDLAPTDYHLF 253


>U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical
           protein R05G6.2 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 264 LSFIGLVVLRYLP*SPHLAPTDFYFFFKV 178
           L  +G  VL + P SP LAPTD++ F  +
Sbjct: 256 LQDLGWTVLPHPPYSPDLAPTDYHLFLSL 284


>AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical
           protein Y49F6A.4 protein.
          Length = 514

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 264 LSFIGLVVLRYLP*SPHLAPTDFYFFFKV 178
           L  +G  VL + P SP LAPTD++ F  +
Sbjct: 231 LQDLGWTVLPHPPYSPDLAPTDYHLFLSL 259


>AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical
           protein Y45G12C.13 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 264 LSFIGLVVLRYLP*SPHLAPTDFYFFFKV 178
           L  +G  VL + P SP LAPTD++ F  +
Sbjct: 256 LQDLGWTVLPHPPYSPDLAPTDYHLFLSL 284


>Z98866-18|CAB11555.2|  387|Caenorhabditis elegans Hypothetical
           protein Y49E10.21 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = -3

Query: 706 EILSPNSEEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNFKVEVENLISNFKE 527
           E+L  +  E++ +   LQKLK   +K     E    L        N K +VE+L + +K 
Sbjct: 21  EVLKASEPELRQDLSSLQKLK--ADKESAAREALTALKTKKNELKNLKNDVESLKNEYKT 78

Query: 526 NINL 515
            I +
Sbjct: 79  YIEM 82


>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
           protein Y116A8C.36 protein.
          Length = 1097

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -3

Query: 730 REENYEKAEILSPNSEEMKTE--AKLLQKLKVSCNKSKLL 617
           +E++Y + EIL  N E+ KT+  +KL+ K +   N  +LL
Sbjct: 540 KEKSYNQTEILKTNKEKYKTDVYSKLVAKREEYRNSFELL 579


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,866,755
Number of Sequences: 27780
Number of extensions: 286806
Number of successful extensions: 843
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)