Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0373
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07320.1 68415.m00839 SWIM zinc finger family protein contain...    30   1.4  
At1g35660.1 68414.m04432 expressed protein                             29   3.3  
At3g07820.1 68416.m00957 polygalacturonase 3 (PGA3) / pectinase ...    28   7.5  
At1g51745.1 68414.m05831 expressed protein                             27   9.9  
At1g10840.1 68414.m01246 eukaryotic translation initiation facto...    27   9.9  

>At2g07320.1 68415.m00839 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 534

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -3

Query: 685 EEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNFKVE 557
           ++MK   K+  KLK+ C  + +LA  +IGL   + V + FK +
Sbjct: 145 DDMKCSCKVFDKLKIPCGHA-MLAANSIGLDFGTLVGECFKTK 186


>At1g35660.1 68414.m04432 expressed protein
          Length = 1155

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = -3

Query: 727  EENYEKAEILSPNSEEMKTEAKLLQKLKVSCNKSK--LLAEKT---IGLAQHSAVSDNFK 563
            EE   K E L  +        K L   K+  +KS    +A KT   +  A+ S+VSDN K
Sbjct: 927  EEMVPKIEALELHRAFENAYQKALGTAKLEYSKSLRYYMAAKTELSVATAEASSVSDNLK 986

Query: 562  VEVENLISN 536
            VEV   ++N
Sbjct: 987  VEVYTQLAN 995


>At3g07820.1 68416.m00957 polygalacturonase 3 (PGA3) / pectinase
           identical to polygalacturonase [Arabidopsis thaliana]
           GI:3152948
          Length = 391

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +2

Query: 14  ISIDQNMYPWHQC--ISASTMVIF*CLLEEVRYTGA*QTEV-LYCLSGIKC 157
           I IDQ   PW+QC    AST+ +     + +R T   +  V L C  G  C
Sbjct: 297 ILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPC 347


>At1g51745.1 68414.m05831 expressed protein
          Length = 635

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 452 IRENLFFN--KIEKDFVSSKQEELSTCEKNTDNKHYLLGKENDMETEIDIANSNDE 291
           +RE+   N  KIE + ++ + + L       D+K  L GKE++     D   + D+
Sbjct: 104 LREDAINNALKIENEHLAKEDDNLCNLSGEEDSKRCLSGKEDEDSGSSDAEETEDD 159


>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
           subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
           SP|Q9C5Z2 Eukaryotic translation initiation factor 3
           subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
           {Arabidopsis thaliana}; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 337

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = -3

Query: 691 NSEEMKTEAKLLQKLKVSCNKSKLLAEKTIGLAQHSAVSDNFKVEVENLISNFKENINLC 512
           + EE++ +    Q   + C +   +   T+G  Q + +     VE+     N++ENI  C
Sbjct: 73  DDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTVLGSYQTVELIETFMNYQENIKRC 132


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,458,709
Number of Sequences: 28952
Number of extensions: 244178
Number of successful extensions: 688
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)