Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0372
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   1.5  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   2.0  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    27   2.0  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    27   2.6  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    26   3.4  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   4.5  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   7.9  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 193 SICAQSAPSFTDW-KRDASGVRKSRT*LDNFILPERTSSVRLHFRY 59
           ++C + +  + DW +R +SG+++  T  +  I  ER   +  HF Y
Sbjct: 861 ALCDKMSEIWADWVQRTSSGIQEEDTIPNEMIDEERMLDLEKHFMY 906


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 362  SWRRYKILKQSHPVKRMIRGIGAETTSTYSQ 454
            S + YK L Q + VK ++  + +ET S+Y++
Sbjct: 1082 SAKNYKSLIQKYKVKSVLSAVDSETASSYAK 1112


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 555 HSASFCLPKLAHLAPSQIFGFIVRVSRSSHPFK 457
           HSA+     +  L P  IFGF++R     H F+
Sbjct: 252 HSATLRRVAIQDLDPCMIFGFLIRDEEEWHSFE 284


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 284 IDLHVRIATVSIRVSPDFDLTR 219
           +DLH+ +A V  RVSPD   T+
Sbjct: 404 VDLHLNLAQVLRRVSPDAPFTK 425


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 555 HSASFCLPKLAHLAPSQIF 499
           H A+FC+  LAHL  SQ F
Sbjct: 244 HHATFCVNSLAHLIGSQPF 262


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 232 KSGETLMETVAILTCKSIVGTGYRGERLIEPSSSWFRPKFPSG 360
           KSG  +++T +++              L+ PSSS  R + P+G
Sbjct: 563 KSGAPVLDTSSLVNPTLAKSASLNNSSLLNPSSSLLRREVPAG 605


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 198 VPAFVLRARLHSLIGNETPRECENH 124
           VP FV    LH   G++TP  C  H
Sbjct: 622 VPGFVSSPNLHLAGGSDTPIYCIEH 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,363
Number of Sequences: 5004
Number of extensions: 47856
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)