Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0372
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.013
SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.041
SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1)               31   0.67 
SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28)                  27   8.2  
SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)            27   8.2  

>SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 38

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 16/24 (66%), Positives = 17/24 (70%)
 Frame = -1

Query: 253 PSGFPLTST*PGIVHHLSGPSICA 182
           P  FPL S   GIVHHLSGP+ CA
Sbjct: 6   PPEFPLASPYSGIVHHLSGPNRCA 29


>SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 17/25 (68%), Positives = 18/25 (72%)
 Frame = -3

Query: 254 SIRVSPDFDLTRHSSPSFGSQHLCS 180
           S RVS  F L RHSSPSFGSQ + S
Sbjct: 40  STRVSSGFTLFRHSSPSFGSQQMRS 64


>SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = -3

Query: 317 ISLSPLYPVPTIDLHVR 267
           ISLSPLYP  TIDLHVR
Sbjct: 38  ISLSPLYPNLTIDLHVR 54


>SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1)
          Length = 276

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -3

Query: 542 SAYQNWPTWHRLRSSASSFE*AGVLTHLKFENR 444
           S YQN PT  R+     + +  G+LT+LKFENR
Sbjct: 86  SGYQNGPTRTRIHCPGFNKQ-VGLLTNLKFENR 117


>SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28)
          Length = 307

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 214 VHHLSGPSICAQSAPSFTDWKRDASGVRKSR 122
           V  L+  S+C Q APSF + K+ AS VR ++
Sbjct: 183 VRKLAKISLCDQYAPSFKEKKKMASEVRVAK 213


>SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)
          Length = 703

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +1

Query: 175 RSEHKCWDPKD--GELCLVRSKSGETLMETVAILTCKSIVGTGYRGERLIEPSSSWFRPK 348
           +++  C D ++  GE     +KS +T     ++ +C+S++ TG   + L +   S  RP+
Sbjct: 303 QNDLSCSDSENEGGESFSTTAKSKDTKANDYSMTSCRSVLATGLNEQSLAKRKESIRRPE 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,449,949
Number of Sequences: 59808
Number of extensions: 356808
Number of successful extensions: 902
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)