Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0372
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical ...    27   9.5  
AC006624-7|AAF39787.1|  642|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical
           protein Y95B8A.11 protein.
          Length = 438

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 379 NFKTVSSGKAND*RHWGRNDLNLFSNFKWVRTP--AYSNDE 495
           NF  + S K+N    +   + +LFS+F+W RTP  A SN+E
Sbjct: 38  NFSNLESPKSNSSSLF---EDSLFSSFRWKRTPERAPSNNE 75


>AC006624-7|AAF39787.1|  642|Caenorhabditis elegans Hypothetical
           protein C53D5.5 protein.
          Length = 642

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
 Frame = +1

Query: 166 MKARSEHKCWDPKDGELCLVRSKSGETLMETVA-----ILTCKSIVGTGYRGERL---IE 321
           M ++S    ++ K  EL  V    G T++  VA      L  K+ V       R+   ++
Sbjct: 521 MSSQSPLVIFNTKGAELMAVGGAGGSTIISGVAGVALHALWLKADVKQAVDAPRMHNQLQ 580

Query: 322 PSSSWFRPKFPSG*LASI 375
           P+ +W+ P FP   + S+
Sbjct: 581 PNYTWYEPNFPKAYVKSL 598


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,909,525
Number of Sequences: 27780
Number of extensions: 269261
Number of successful extensions: 522
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)