Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0372
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05570.1 68418.m00605 transducin family protein / WD-40 repea...    28   5.1  
At4g08480.1 68417.m01399 mitogen-activated protein kinase, putat...    28   5.1  
At5g57580.1 68418.m07194 calmodulin-binding protein similar to c...    27   8.9  
At2g38320.1 68415.m04708 expressed protein                             27   8.9  

>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
           family protein similar to unknown protein (pir||T04661);
           contains Pfam PF00400: WD domain, G-beta repeat (4
           copies, 2 weak)|8683726|gb|AV524198.1|AV524198
          Length = 1124

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = -3

Query: 326 DGSISLSPL-YP--VPTIDLHVRIATVS 252
           +  IS+SPL YP  VPT+D H+ +AT S
Sbjct: 414 ENKISVSPLPYPMVVPTMDPHMTVATFS 441


>At4g08480.1 68417.m01399 mitogen-activated protein kinase, putative
           similar to mitogen-activated protein kinase [Arabidopsis
           thaliana] gi|1255448|dbj|BAA09057; contains Pfam
           PF00069: Protein kinase domain
          Length = 773

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = -3

Query: 383 KFYIDASYPEGNFGRNQLLDGSISLSPLYPVPTIDLHVRIATVSIRVSPDFDLTRHSSPS 204
           K  +D+   E   G   +    +   P+  +P +DL      +    +PD ++ R  S S
Sbjct: 375 KEVVDSGTVENRRGIKGVRPSVLKPPPVMKLPPVDLPGSSWDILTHFAPDSEIVRRPSSS 434

Query: 203 FGSQHLCSE 177
             S++ C E
Sbjct: 435 SSSENGCDE 443


>At5g57580.1 68418.m07194 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 647

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 193 WDPKDGELCLVRSKSGETLMETVAI-LTCKSIVGTGYRGERLIEPSSSWFRPK 348
           W  ++ E  +V+ +SG+  + T  + +T K  VGT   GE +   +SSW R +
Sbjct: 160 WTQEEFESHVVKERSGKRPLLTGEVYVTLKEGVGT--LGELVFTDNSSWIRSR 210


>At2g38320.1 68415.m04708 expressed protein
          Length = 410

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 418 RHWGRNDLNLFSNFKWVRTP 477
           RHW  +D+ +F+++ W R P
Sbjct: 215 RHWTNSDIIVFNSYLWWRMP 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,334,180
Number of Sequences: 28952
Number of extensions: 254765
Number of successful extensions: 547
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)