Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0370
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0272 - 23738514-23738817,23739382-23740748 36 0.044
01_01_0613 - 4571689-4572348 31 0.95
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 30 1.7
01_06_0456 + 29521282-29522064 30 1.7
04_04_0040 + 22322839-22324173 29 2.9
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 29 3.8
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 5.1
06_03_1448 + 30235336-30236763 28 6.7
06_03_1443 + 30182018-30183445 28 6.7
06_03_1440 + 30166515-30167942 28 6.7
06_03_1437 + 30151030-30152457 28 6.7
06_03_1429 + 30100834-30102261 28 6.7
06_03_1425 + 30084383-30085810 28 6.7
06_03_1420 - 30053713-30055140 28 6.7
12_01_0057 + 489788-490882,490891-492207 28 8.8
11_01_0057 + 434293-436698 28 8.8
01_05_0548 + 23149271-23149568,23149766-23149845,23150137-231502... 28 8.8
>05_05_0272 - 23738514-23738817,23739382-23740748
Length = 556
Score = 35.5 bits (78), Expect = 0.044
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 304 GHLRYS-LTDVPPQSNSPLAVSSNRITREF*TATSVSATSPLCTLGTKH 161
G RY+ +TDVPP N PL V N IT EF T + +P ++ + H
Sbjct: 398 GVFRYNQMTDVPPAVNGPLHVVPNVITAEFRTFIEIIFENPEKSMDSVH 446
>01_01_0613 - 4571689-4572348
Length = 219
Score = 31.1 bits (67), Expect = 0.95
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = -2
Query: 313 LALGHLRYSLTDVPPQSNSPLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 137
L LGH YSL +PP + P+ V+ ++ ++S SA + +G + R+ +++D
Sbjct: 51 LELGHSVYSL-PLPPPPSQPVVVAGGN-NDQYGVSSSSSAAATTSRIGFRTRSEVEVLD 107
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 421 YKEFLARG-ARKVTTGITGLWQPSVHSDVAFD 513
YK F A G RKV GIT + PS+ D+AFD
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFD 664
>01_06_0456 + 29521282-29522064
Length = 260
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Frame = -3
Query: 252 WQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 133
W+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 13 WRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>04_04_0040 + 22322839-22324173
Length = 444
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 331 VSVLAELALGHLRYSLTDVPPQSNSPLAVSSNRITREF*TATSVSATSPL 182
+S++++L L Y LT + +NSPL + S E A S T+PL
Sbjct: 227 LSLVSQLGLDKFSYCLTSLDDTNNSPLLLGSLAGISEASAAASSVQTTPL 276
>03_05_1065 +
30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 29.1 bits (62), Expect = 3.8
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -2
Query: 358 SFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPLAVSSNRITREF*TA-TSVSATSPL 182
+F P+ P LA + GH R+ + D + S LA N+ R + +VSA + L
Sbjct: 371 AFHPYLP-----LATTSSGHRRFGMEDEIEEELS-LAGIFNKGDRSYAVRRAAVSAYAAL 424
Query: 181 CTLGTKHRAPADIIDR 134
C + H AP + DR
Sbjct: 425 CAVLCAHEAPGGLPDR 440
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 188 TTLHAWNETPCARRYY 141
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 257 PPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 123
PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 257 PPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 123
PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 257 PPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 123
PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 257 PPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 123
PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 257 PPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 123
PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 257 PPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 123
PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 257 PPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 123
PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>12_01_0057 + 489788-490882,490891-492207
Length = 803
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/53 (24%), Positives = 32/53 (60%)
Frame = +1
Query: 487 SVHSDVAFDPSMSALPIIANKFAKRWIVHPSKGNVSWD*TVVRQVSFTLLMAC 645
S+ +++A S+S+ P++A+ A+ +++ G V+ + +++ V+ L AC
Sbjct: 166 SLITELAVRLSLSSFPVVADALAELDLLNSELGRVALNASLITDVTSWFLRAC 218
>11_01_0057 + 434293-436698
Length = 801
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/53 (24%), Positives = 32/53 (60%)
Frame = +1
Query: 487 SVHSDVAFDPSMSALPIIANKFAKRWIVHPSKGNVSWD*TVVRQVSFTLLMAC 645
S+ +++A S+S+ P++A+ A+ +++ G V+ + +++ V+ L AC
Sbjct: 166 SLITELAVRLSLSSFPVVADALAELDLLNSELGRVALNASLITDVTSWFLRAC 218
>01_05_0548 +
23149271-23149568,23149766-23149845,23150137-23150223,
23150421-23150729,23150774-23150899,23151977-23152360,
23152603-23152608
Length = 429
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 638 WLVVAIVILLSTRGTAVSDIWFH 706
W+V A+ I+ R S+IWFH
Sbjct: 295 WVVQALAIIAEYRKLLASEIWFH 317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,593,711
Number of Sequences: 37544
Number of extensions: 489489
Number of successful extensions: 1226
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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