Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0370
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.2  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   6.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.9  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   6.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.1  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 618 LSHDGLIPAHVPF*WVNNPTLGEFVRNDRKSRH 520
           +SH   +  HVP  W+  PT     RN   + H
Sbjct: 694 VSHTQRLVVHVPPRWIVEPTDVSVERNKHVALH 726


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 71  SSLKNHYFHCFITYSVGRK 127
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 50  VGDRFARSSLKNHYFHCFI 106
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 303 DTCVIL*QMYRPSQTPPWQCPRTGSRGSFKRRRAFPPR 190
           D CV+     +   +PP    R G++ + +R    PP+
Sbjct: 606 DVCVLKTDTNQSCPSPPVTTKRDGTQETEERLPPLPPK 643


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 50  VGDRFARSSLKNHYFHCFI 106
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 258 PPWQCPRTGSRGSFKRRRAFPPRHHSARLER 166
           PP Q P +      +RRR  P  +  ++++R
Sbjct: 395 PPRQTPPSRKESGRRRRRRTPRYNSVSKIDR 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,355
Number of Sequences: 438
Number of extensions: 4804
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)