Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0370
(734 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA... 33 0.20
At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA... 33 0.20
At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA... 33 0.20
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 0.79
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote... 29 3.2
At3g50060.1 68416.m05473 myb family transcription factor contain... 29 3.2
At4g39070.1 68417.m05533 zinc finger (B-box type) family protein... 29 4.2
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 7.4
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 7.4
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 27 9.8
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 27 9.8
At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containi... 27 9.8
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 9.8
>At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 385
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = -2
Query: 316 ELALGHLRYSLTDVPPQSNSPLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 137
++ GH +TD PP SNS L + NR+ AT++S + L L T R I+D
Sbjct: 2 DMKSGHSSPVMTDSPPISNSRLTIRQNRLPYSSAAATAISQNNNL--LLTVPRKKTGILD 59
>At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 384
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = -2
Query: 316 ELALGHLRYSLTDVPPQSNSPLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 137
++ GH +TD PP SNS L + NR+ AT++S + L L T R I+D
Sbjct: 2 DMKSGHSSPVMTDSPPISNSRLTIRQNRLPYSSAAATAISQNNNL--LLTVPRKKTGILD 59
>At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 385
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = -2
Query: 316 ELALGHLRYSLTDVPPQSNSPLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 137
++ GH +TD PP SNS L + NR+ AT++S + L L T R I+D
Sbjct: 2 DMKSGHSSPVMTDSPPISNSRLTIRQNRLPYSSAAATAISQNNNL--LLTVPRKKTGILD 59
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 175 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 29
LG +H PA +I+R P PP +S +++++F E +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277
>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
beta-ketoacyl-CoA synthase - Simmondsia
chinensis,PID:g1045614
Length = 451
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 314 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 427
LS R W RAK L+Q+ TH+ E T+Y+S ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317
>At3g50060.1 68416.m05473 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA MYB-related protein (1107 bp)
GI:1263096
Length = 301
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 205 SSPFKTPA*SGSRTLPGGSLTGAVHLSKNNAGVLRPAQRGQKPRVEQKGK 354
SS + P S S +LPG T + H + NNA + + K VE++G+
Sbjct: 195 SSSSEDPPTSLSLSLPGAENTSSSHNNNNNALMFPRFESQMKINVEERGE 244
>At4g39070.1 68417.m05533 zinc finger (B-box type) family protein
salt-tolerance protein - Arabidopsis thaliana,
PID:e224078
Length = 242
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2
Query: 367 DQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPL 251
D+A+ C R V +LA HLR+SLT P ++PL
Sbjct: 20 DEAALCNGCDRHVHFANKLAGKHLRFSLTS-PTFKDAPL 57
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 139 DRAPLPPNRVSNETMKVVVFQRRSRET 59
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 190 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 53
S LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 130 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 20
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 130 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 20
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 834
Score = 27.5 bits (58), Expect = 9.8
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +3
Query: 513 SFDVGSSYHCEQIRQALDCSP 575
S +G +HC+ +++ L+C+P
Sbjct: 570 SVQLGQEFHCQLLKRGLECNP 590
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 178 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 83
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,739,328
Number of Sequences: 28952
Number of extensions: 363803
Number of successful extensions: 886
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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