Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0369
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          25   0.45 
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           25   0.45 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   9.6  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +1

Query: 343 SRLVQGSYQFVYGKSISNVRKSEIFKALNLKQKK 444
           ++LV+   +F +GK +S  R+ +I + LNL +++
Sbjct: 98  AQLVELEREFHHGKYLSRPRRIQIAENLNLSERQ 131


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +1

Query: 343 SRLVQGSYQFVYGKSISNVRKSEIFKALNLKQKK 444
           ++LV+   +F +GK +S  R+ +I + LNL +++
Sbjct: 89  AQLVELEREFHHGKYLSRPRRIQIAENLNLSERQ 122


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 679 RTNRHLVGENRHDGHSTLS 623
           R  RHL+    H  H+T S
Sbjct: 268 RFTRHLIQRRTHTRHTTTS 286


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,325
Number of Sequences: 336
Number of extensions: 3149
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)